These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
5. Compression of FASTQ and SAM format sequencing data. Bonfield JK; Mahoney MV PLoS One; 2013; 8(3):e59190. PubMed ID: 23533605 [TBL] [Abstract][Full Text] [Related]
6. MAFCO: a compression tool for MAF files. Matos LM; Neves AJ; Pratas D; Pinho AJ PLoS One; 2015; 10(3):e0116082. PubMed ID: 25816229 [TBL] [Abstract][Full Text] [Related]
7. Using multiple sequence alignment editors and formatters. Mount DW Cold Spring Harb Protoc; 2009 Jul; 2009(7):pdb.top45. PubMed ID: 20147226 [TBL] [Abstract][Full Text] [Related]
8. DELIMINATE--a fast and efficient method for loss-less compression of genomic sequences: sequence analysis. Mohammed MH; Dutta A; Bose T; Chadaram S; Mande SS Bioinformatics; 2012 Oct; 28(19):2527-9. PubMed ID: 22833526 [TBL] [Abstract][Full Text] [Related]
9. LCQS: an efficient lossless compression tool of quality scores with random access functionality. Fu J; Ke B; Dong S BMC Bioinformatics; 2020 Mar; 21(1):109. PubMed ID: 32183707 [TBL] [Abstract][Full Text] [Related]
10. SNAP: Combine and Map modules for multilocus population genetic analysis. Aylor DL; Price EW; Carbone I Bioinformatics; 2006 Jun; 22(11):1399-401. PubMed ID: 16601003 [TBL] [Abstract][Full Text] [Related]
11. Reference-based compression of short-read sequences using path encoding. Kingsford C; Patro R Bioinformatics; 2015 Jun; 31(12):1920-8. PubMed ID: 25649622 [TBL] [Abstract][Full Text] [Related]
12. Hardware accelerator for genomic sequence alignment. Chiang J; Studniberg M; Shaw J; Seto S; Truong K Conf Proc IEEE Eng Med Biol Soc; 2006; 2006():5787-9. PubMed ID: 17946720 [TBL] [Abstract][Full Text] [Related]
13. PanDepth, an ultrafast and efficient genomic tool for coverage calculation. Yu H; Shi C; He W; Li F; Ouyang B Brief Bioinform; 2024 Mar; 25(3):. PubMed ID: 38701418 [TBL] [Abstract][Full Text] [Related]
14. CoMSA: compression of protein multiple sequence alignment files. Deorowicz S; Walczyszyn J; Debudaj-Grabysz A Bioinformatics; 2019 Jan; 35(2):227-234. PubMed ID: 30010777 [TBL] [Abstract][Full Text] [Related]