BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

114 related articles for article (PubMed ID: 22171333)

  • 1. JDet: interactive calculation and visualization of function-related conservation patterns in multiple sequence alignments and structures.
    Muth T; García-Martín JA; Rausell A; Juan D; Valencia A; Pazos F
    Bioinformatics; 2012 Feb; 28(4):584-6. PubMed ID: 22171333
    [TBL] [Abstract][Full Text] [Related]  

  • 2. AL2CO: calculation of positional conservation in a protein sequence alignment.
    Pei J; Grishin NV
    Bioinformatics; 2001 Aug; 17(8):700-12. PubMed ID: 11524371
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Protein residues determining interaction specificity in paralogous families.
    Pitarch B; Ranea JAG; Pazos F
    Bioinformatics; 2021 May; 37(8):1076-1082. PubMed ID: 33135068
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Sequence alignment visualization in HTML5 without Java.
    Gille C; Birgit W; Gille A
    Bioinformatics; 2014 Jan; 30(1):121-2. PubMed ID: 24273246
    [TBL] [Abstract][Full Text] [Related]  

  • 5. VISTAS: a package for VIsualizing STructures and sequences of proteins.
    Perkins DN; Attwood TK
    J Mol Graph; 1995 Feb; 13(1):73-5, 62. PubMed ID: 7794837
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Studying the co-evolution of protein families with the Mirrortree web server.
    Ochoa D; Pazos F
    Bioinformatics; 2010 May; 26(10):1370-1. PubMed ID: 20363731
    [TBL] [Abstract][Full Text] [Related]  

  • 7. COMBOSA3D: combining sequence alignments with three-dimensional structures.
    Stothard PM
    Bioinformatics; 2001 Feb; 17(2):198-9. PubMed ID: 11238080
    [TBL] [Abstract][Full Text] [Related]  

  • 8. ViTO: tool for refinement of protein sequence-structure alignments.
    Catherinot V; Labesse G
    Bioinformatics; 2004 Dec; 20(18):3694-6. PubMed ID: 15271783
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Tools for integrated sequence-structure analysis with UCSF Chimera.
    Meng EC; Pettersen EF; Couch GS; Huang CC; Ferrin TE
    BMC Bioinformatics; 2006 Jul; 7():339. PubMed ID: 16836757
    [TBL] [Abstract][Full Text] [Related]  

  • 10. ESPript: analysis of multiple sequence alignments in PostScript.
    Gouet P; Courcelle E; Stuart DI; Métoz F
    Bioinformatics; 1999 Apr; 15(4):305-8. PubMed ID: 10320398
    [TBL] [Abstract][Full Text] [Related]  

  • 11. CINEMA--a novel colour INteractive editor for multiple alignments.
    Parry-Smith DJ; Payne AW; Michie AD; Attwood TK
    Gene; 1998 Oct; 221(1):GC57-63. PubMed ID: 9852962
    [TBL] [Abstract][Full Text] [Related]  

  • 12. BALCONY: an R package for MSA and functional compartments of protein variability analysis.
    Płuciennik A; Stolarczyk M; Bzówka M; Raczyńska A; Magdziarz T; Góra A
    BMC Bioinformatics; 2018 Aug; 19(1):300. PubMed ID: 30107777
    [TBL] [Abstract][Full Text] [Related]  

  • 13. VISSA: a program to visualize structural features from structure sequence alignment.
    Li W; Godzik A
    Bioinformatics; 2006 Apr; 22(7):887-8. PubMed ID: 16434438
    [TBL] [Abstract][Full Text] [Related]  

  • 14. A new progressive-iterative algorithm for multiple structure alignment.
    Lupyan D; Leo-Macias A; Ortiz AR
    Bioinformatics; 2005 Aug; 21(15):3255-63. PubMed ID: 15941743
    [TBL] [Abstract][Full Text] [Related]  

  • 15. COPRED: prediction of fold, GO molecular function and functional residues at the domain level.
    López D; Pazos F
    Bioinformatics; 2013 Jul; 29(14):1811-2. PubMed ID: 23720488
    [TBL] [Abstract][Full Text] [Related]  

  • 16. ABC: software for interactive browsing of genomic multiple sequence alignment data.
    Cooper GM; Singaravelu SA; Sidow A
    BMC Bioinformatics; 2004 Dec; 5():192. PubMed ID: 15588288
    [TBL] [Abstract][Full Text] [Related]  

  • 17. VISTAL--a new 2D visualization tool of protein 3D structural alignments.
    Kolodny R; Honig B
    Bioinformatics; 2006 Sep; 22(17):2166-7. PubMed ID: 16837525
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Mulan: multiple-sequence local alignment and visualization for studying function and evolution.
    Ovcharenko I; Loots GG; Giardine BM; Hou M; Ma J; Hardison RC; Stubbs L; Miller W
    Genome Res; 2005 Jan; 15(1):184-94. PubMed ID: 15590941
    [TBL] [Abstract][Full Text] [Related]  

  • 19. An integrated approach to the analysis and modeling of protein sequences and structures. III. A comparative study of sequence conservation in protein structural families using multiple structural alignments.
    Yang AS; Honig B
    J Mol Biol; 2000 Aug; 301(3):691-711. PubMed ID: 10966778
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Sequence harmony: detecting functional specificity from alignments.
    Feenstra KA; Pirovano W; Krab K; Heringa J
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W495-8. PubMed ID: 17584793
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.