1233 related articles for article (PubMed ID: 22192575)
1. MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects.
Holt C; Yandell M
BMC Bioinformatics; 2011 Dec; 12():491. PubMed ID: 22192575
[TBL] [Abstract][Full Text] [Related]
2. High-throughput comparison, functional annotation, and metabolic modeling of plant genomes using the PlantSEED resource.
Seaver SM; Gerdes S; Frelin O; Lerma-Ortiz C; Bradbury LM; Zallot R; Hasnain G; Niehaus TD; El Yacoubi B; Pasternak S; Olson R; Pusch G; Overbeek R; Stevens R; de Crécy-Lagard V; Ware D; Hanson AD; Henry CS
Proc Natl Acad Sci U S A; 2014 Jul; 111(26):9645-50. PubMed ID: 24927599
[TBL] [Abstract][Full Text] [Related]
3. Plant genome and transcriptome annotations: from misconceptions to simple solutions.
Bolger ME; Arsova B; Usadel B
Brief Bioinform; 2018 May; 19(3):437-449. PubMed ID: 28062412
[TBL] [Abstract][Full Text] [Related]
4. GASS: genome structural annotation for Eukaryotes based on species similarity.
Wang Y; Chen L; Song N; Lei X
BMC Genomics; 2015 Mar; 16(1):150. PubMed ID: 25764973
[TBL] [Abstract][Full Text] [Related]
5. Twelve quick steps for genome assembly and annotation in the classroom.
Jung H; Ventura T; Chung JS; Kim WJ; Nam BH; Kong HJ; Kim YO; Jeon MS; Eyun SI
PLoS Comput Biol; 2020 Nov; 16(11):e1008325. PubMed ID: 33180771
[TBL] [Abstract][Full Text] [Related]
6. CodingQuarry: highly accurate hidden Markov model gene prediction in fungal genomes using RNA-seq transcripts.
Testa AC; Hane JK; Ellwood SR; Oliver RP
BMC Genomics; 2015 Mar; 16(1):170. PubMed ID: 25887563
[TBL] [Abstract][Full Text] [Related]
7. PANNOTATOR: an automated tool for annotation of pan-genomes.
Santos AR; Barbosa E; Fiaux K; Zurita-Turk M; Chaitankar V; Kamapantula B; Abdelzaher A; Ghosh P; Tiwari S; Barve N; Jain N; Barh D; Silva A; Miyoshi A; Azevedo V
Genet Mol Res; 2013 Aug; 12(3):2982-9. PubMed ID: 24065654
[TBL] [Abstract][Full Text] [Related]
8. AGORA: organellar genome annotation from the amino acid and nucleotide references.
Jung J; Kim JI; Jeong YS; Yi G
Bioinformatics; 2018 Aug; 34(15):2661-2663. PubMed ID: 29617954
[TBL] [Abstract][Full Text] [Related]
9. Snpdat: easy and rapid annotation of results from de novo snp discovery projects for model and non-model organisms.
Doran AG; Creevey CJ
BMC Bioinformatics; 2013 Feb; 14():45. PubMed ID: 23390980
[TBL] [Abstract][Full Text] [Related]
10. CycADS: an annotation database system to ease the development and update of BioCyc databases.
Vellozo AF; Véron AS; Baa-Puyoulet P; Huerta-Cepas J; Cottret L; Febvay G; Calevro F; Rahbé Y; Douglas AE; Gabaldón T; Sagot MF; Charles H; Colella S
Database (Oxford); 2011; 2011():bar008. PubMed ID: 21474551
[TBL] [Abstract][Full Text] [Related]
11. RATT: Rapid Annotation Transfer Tool.
Otto TD; Dillon GP; Degrave WS; Berriman M
Nucleic Acids Res; 2011 May; 39(9):e57. PubMed ID: 21306991
[TBL] [Abstract][Full Text] [Related]
12. Gene prediction and annotation in Penstemon (Plantaginaceae): A workflow for marker development from extremely low-coverage genome sequencing.
Blischak PD; Wenzel AJ; Wolfe AD
Appl Plant Sci; 2014 Dec; 2(12):. PubMed ID: 25506519
[TBL] [Abstract][Full Text] [Related]
13. AGeS: a software system for microbial genome sequence annotation.
Kumar K; Desai V; Cheng L; Khitrov M; Grover D; Satya RV; Yu C; Zavaljevski N; Reifman J
PLoS One; 2011 Mar; 6(3):e17469. PubMed ID: 21408217
[TBL] [Abstract][Full Text] [Related]
14. RGAAT: A Reference-based Genome Assembly and Annotation Tool for New Genomes and Upgrade of Known Genomes.
Liu W; Wu S; Lin Q; Gao S; Ding F; Zhang X; Aljohi HA; Yu J; Hu S
Genomics Proteomics Bioinformatics; 2018 Oct; 16(5):373-381. PubMed ID: 30583062
[TBL] [Abstract][Full Text] [Related]
15. Genix: a new online automated pipeline for bacterial genome annotation.
Kremer FS; Eslabão MR; Dellagostin OA; Pinto LD
FEMS Microbiol Lett; 2016 Dec; 363(23):. PubMed ID: 27856568
[TBL] [Abstract][Full Text] [Related]
16. MEGAnnotator: a user-friendly pipeline for microbial genomes assembly and annotation.
Lugli GA; Milani C; Mancabelli L; van Sinderen D; Ventura M
FEMS Microbiol Lett; 2016 Apr; 363(7):. PubMed ID: 26936607
[TBL] [Abstract][Full Text] [Related]
17. Algal Functional Annotation Tool: a web-based analysis suite to functionally interpret large gene lists using integrated annotation and expression data.
Lopez D; Casero D; Cokus SJ; Merchant SS; Pellegrini M
BMC Bioinformatics; 2011 Jul; 12():282. PubMed ID: 21749710
[TBL] [Abstract][Full Text] [Related]
18. DNApod: DNA polymorphism annotation database from next-generation sequence read archives.
Mochizuki T; Tanizawa Y; Fujisawa T; Ohta T; Nikoh N; Shimizu T; Toyoda A; Fujiyama A; Kurata N; Nagasaki H; Kaminuma E; Nakamura Y
PLoS One; 2017; 12(2):e0172269. PubMed ID: 28234924
[TBL] [Abstract][Full Text] [Related]
19. BRAKER3: Fully automated genome annotation using RNA-seq and protein evidence with GeneMark-ETP, AUGUSTUS, and TSEBRA.
Gabriel L; Brůna T; Hoff KJ; Ebel M; Lomsadze A; Borodovsky M; Stanke M
Genome Res; 2024 Jun; 34(5):769-777. PubMed ID: 38866550
[TBL] [Abstract][Full Text] [Related]
20.
; ; . PubMed ID:
[No Abstract] [Full Text] [Related]
[Next] [New Search]
