3094 related articles for article (PubMed ID: 22217600)
1. MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity.
Wang Y; Tang H; Debarry JD; Tan X; Li J; Wang X; Lee TH; Jin H; Marler B; Guo H; Kissinger JC; Paterson AH
Nucleic Acids Res; 2012 Apr; 40(7):e49. PubMed ID: 22217600
[TBL] [Abstract][Full Text] [Related]
2. MCScanX-transposed: detecting transposed gene duplications based on multiple colinearity scans.
Wang Y; Li J; Paterson AH
Bioinformatics; 2013 Jun; 29(11):1458-60. PubMed ID: 23539305
[TBL] [Abstract][Full Text] [Related]
3. Detection of colinear blocks and synteny and evolutionary analyses based on utilization of MCScanX.
Wang Y; Tang H; Wang X; Sun Y; Joseph PV; Paterson AH
Nat Protoc; 2024 Mar; ():. PubMed ID: 38491145
[TBL] [Abstract][Full Text] [Related]
4. Screening synteny blocks in pairwise genome comparisons through integer programming.
Tang H; Lyons E; Pedersen B; Schnable JC; Paterson AH; Freeling M
BMC Bioinformatics; 2011 Apr; 12():102. PubMed ID: 21501495
[TBL] [Abstract][Full Text] [Related]
5. Synteny and collinearity in plant genomes.
Tang H; Bowers JE; Wang X; Ming R; Alam M; Paterson AH
Science; 2008 Apr; 320(5875):486-8. PubMed ID: 18436778
[TBL] [Abstract][Full Text] [Related]
6. VGSC2: Second generation vector graph toolkit of genome synteny and collinearity.
Xu Y; Wang Q; Tanon Reyes L; Cheng F; Bi C; Ye N; Wu G
Genomics; 2020 Jan; 112(1):286-288. PubMed ID: 30772429
[TBL] [Abstract][Full Text] [Related]
7. Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events.
Bowers JE; Chapman BA; Rong J; Paterson AH
Nature; 2003 Mar; 422(6930):433-8. PubMed ID: 12660784
[TBL] [Abstract][Full Text] [Related]
8. Integrated syntenic and phylogenomic analyses reveal an ancient genome duplication in monocots.
Jiao Y; Li J; Tang H; Paterson AH
Plant Cell; 2014 Jul; 26(7):2792-802. PubMed ID: 25082857
[TBL] [Abstract][Full Text] [Related]
9. Visualization Tools for Genomic Conservation.
Bandi V; Gutwin C; Siri JN; Neufeld E; Sharpe A; Parkin I
Methods Mol Biol; 2022; 2443():285-308. PubMed ID: 35037213
[TBL] [Abstract][Full Text] [Related]
10. Angiosperm genome comparisons reveal early polyploidy in the monocot lineage.
Tang H; Bowers JE; Wang X; Paterson AH
Proc Natl Acad Sci U S A; 2010 Jan; 107(1):472-7. PubMed ID: 19966307
[TBL] [Abstract][Full Text] [Related]
11. Plant Genome Duplication Database.
Lee TH; Kim J; Robertson JS; Paterson AH
Methods Mol Biol; 2017; 1533():267-277. PubMed ID: 27987177
[TBL] [Abstract][Full Text] [Related]
12. SyntTax: a web server linking synteny to prokaryotic taxonomy.
Oberto J
BMC Bioinformatics; 2013 Jan; 14():4. PubMed ID: 23323735
[TBL] [Abstract][Full Text] [Related]
13. ShinySyn: a Shiny/R application for the interactive visualization and integration of macro- and micro-synteny data.
Xiao Z; Lam HM
Bioinformatics; 2022 Sep; 38(18):4406-4408. PubMed ID: 35866686
[TBL] [Abstract][Full Text] [Related]
14. CrusView: a Java-based visualization platform for comparative genomics analyses in Brassicaceae species.
Chen H; Wang X
Plant Physiol; 2013 Sep; 163(1):354-62. PubMed ID: 23898041
[TBL] [Abstract][Full Text] [Related]
15. PGDD: a database of gene and genome duplication in plants.
Lee TH; Tang H; Wang X; Paterson AH
Nucleic Acids Res; 2013 Jan; 41(Database issue):D1152-8. PubMed ID: 23180799
[TBL] [Abstract][Full Text] [Related]
16. Fractionation, rearrangement and subgenome dominance.
Sankoff D; Zheng C
Bioinformatics; 2012 Sep; 28(18):i402-i408. PubMed ID: 22962459
[TBL] [Abstract][Full Text] [Related]
17. Gene order in rosid phylogeny, inferred from pairwise syntenies among extant genomes.
Zheng C; Sankoff D
BMC Bioinformatics; 2012 Jun; 13 Suppl 10(Suppl 10):S9. PubMed ID: 22759433
[TBL] [Abstract][Full Text] [Related]
18. SyMAP v3.4: a turnkey synteny system with application to plant genomes.
Soderlund C; Bomhoff M; Nelson WM
Nucleic Acids Res; 2011 May; 39(10):e68. PubMed ID: 21398631
[TBL] [Abstract][Full Text] [Related]
19. SynChro: a fast and easy tool to reconstruct and visualize synteny blocks along eukaryotic chromosomes.
Drillon G; Carbone A; Fischer G
PLoS One; 2014; 9(3):e92621. PubMed ID: 24651407
[TBL] [Abstract][Full Text] [Related]
20. Whole-genome microsynteny-based phylogeny of angiosperms.
Zhao T; Zwaenepoel A; Xue JY; Kao SM; Li Z; Schranz ME; Van de Peer Y
Nat Commun; 2021 Jun; 12(1):3498. PubMed ID: 34108452
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
