95 related articles for article (PubMed ID: 22225189)
1. Conformational fluctuations of a protein-DNA complex and the structure and ordering of water around it.
Sinha SK; Bandyopadhyay S
J Chem Phys; 2011 Dec; 135(24):245104. PubMed ID: 22225189
[TBL] [Abstract][Full Text] [Related]
2. Conformational flexibility of a protein-carbohydrate complex and the structure and ordering of surrounding water.
Jana M; Bandyopadhyay S
Phys Chem Chem Phys; 2012 May; 14(18):6628-38. PubMed ID: 22460826
[TBL] [Abstract][Full Text] [Related]
3. Dynamic properties of water around a protein-DNA complex from molecular dynamics simulations.
Sinha SK; Bandyopadhyay S
J Chem Phys; 2011 Oct; 135(13):135101. PubMed ID: 21992339
[TBL] [Abstract][Full Text] [Related]
4. Solution structure of the Arabidopsis thaliana telomeric repeat-binding protein DNA binding domain: a new fold with an additional C-terminal helix.
Sue SC; Hsiao HH; Chung BC; Cheng YH; Hsueh KL; Chen CM; Ho CH; Huang TH
J Mol Biol; 2006 Feb; 356(1):72-85. PubMed ID: 16337232
[TBL] [Abstract][Full Text] [Related]
5. NMR and molecular dynamics studies of the hydration of a zinc finger-DNA complex.
Tsui V; Radhakrishnan I; Wright PE; Case DA
J Mol Biol; 2000 Oct; 302(5):1101-17. PubMed ID: 11183777
[TBL] [Abstract][Full Text] [Related]
6. Restricted dynamics of water around a protein-carbohydrate complex: computer simulation studies.
Jana M; Bandyopadhyay S
J Chem Phys; 2012 Aug; 137(5):055102. PubMed ID: 22894384
[TBL] [Abstract][Full Text] [Related]
7. Differential flexibility of the secondary structures of lysozyme and the structure and ordering of surrounding water molecules.
Sinha SK; Bandyopadhyay S
J Chem Phys; 2011 Mar; 134(11):115101. PubMed ID: 21428665
[TBL] [Abstract][Full Text] [Related]
8. Structure-based prediction of DNA target sites by regulatory proteins.
Kono H; Sarai A
Proteins; 1999 Apr; 35(1):114-31. PubMed ID: 10090291
[TBL] [Abstract][Full Text] [Related]
9. How proteins bind to DNA: target discrimination and dynamic sequence search by the telomeric protein TRF1.
Wieczór M; Czub J
Nucleic Acids Res; 2017 Jul; 45(13):7643-7654. PubMed ID: 28633355
[TBL] [Abstract][Full Text] [Related]
10. Structure of the DNA-binding domain of human telomeric protein, TRF1 and its interaction with telomeric DNA.
Nishikawa T; Okamura H; Nagadoi A; Koig P; Rhodes D; Nishimura Y
Nucleic Acids Res Suppl; 2001; (1):273-4. PubMed ID: 12836370
[TBL] [Abstract][Full Text] [Related]
11. The natural DNA bending angle in the lac repressor headpiece-O1 operator complex is determined by protein-DNA contacts and water release.
Barr D; van der Vaart A
Phys Chem Chem Phys; 2012 Feb; 14(6):2070-7. PubMed ID: 22234444
[TBL] [Abstract][Full Text] [Related]
12. Structure, thermodynamics and cooperativity of the glucocorticoid receptor DNA-binding domain in complex with different response elements. Molecular dynamics simulation and free energy perturbation studies.
Eriksson MA; Nilsson L
J Mol Biol; 1995 Oct; 253(3):453-72. PubMed ID: 7473727
[TBL] [Abstract][Full Text] [Related]
13. 20ns molecular dynamics simulation of the antennapedia homeodomain-DNA complex: water interaction and DNA structure analysis.
Roy S; Thakur AR
J Biomol Struct Dyn; 2010 Feb; 27(4):443-56. PubMed ID: 19916566
[TBL] [Abstract][Full Text] [Related]
14. Structure, dynamics and hydration of the nogalamycin-d(ATGCAT)2Complex determined by NMR and molecular dynamics simulations in solution.
Williams HE; Searle MS
J Mol Biol; 1999 Jul; 290(3):699-716. PubMed ID: 10395824
[TBL] [Abstract][Full Text] [Related]
15. Water-mediated contacts in the trp-repressor operator complex recognition process.
Wibowo FR; Rauch C; Trieb M; Wellenzohn B; Liedl KR
Biopolymers; 2004 Apr; 73(6):668-81. PubMed ID: 15048770
[TBL] [Abstract][Full Text] [Related]
16. Water-mediated interactions between DNA and PhoB DNA-binding/transactivation domain: NMR-restrained molecular dynamics in explicit water environment.
Yamane T; Okamura H; Ikeguchi M; Nishimura Y; Kidera A
Proteins; 2008 Jun; 71(4):1970-83. PubMed ID: 18186481
[TBL] [Abstract][Full Text] [Related]
17. A shared docking motif in TRF1 and TRF2 used for differential recruitment of telomeric proteins.
Chen Y; Yang Y; van Overbeek M; Donigian JR; Baciu P; de Lange T; Lei M
Science; 2008 Feb; 319(5866):1092-6. PubMed ID: 18202258
[TBL] [Abstract][Full Text] [Related]
18. Structure, function, and dynamics of the dimerization and DNA-binding domain of oncogenic transcription factor v-Myc.
Fieber W; Schneider ML; Matt T; Kräutler B; Konrat R; Bister K
J Mol Biol; 2001 Apr; 307(5):1395-410. PubMed ID: 11292350
[TBL] [Abstract][Full Text] [Related]
19. TRF1 is a dimer and bends telomeric DNA.
Bianchi A; Smith S; Chong L; Elias P; de Lange T
EMBO J; 1997 Apr; 16(7):1785-94. PubMed ID: 9130722
[TBL] [Abstract][Full Text] [Related]
20. Solvent mediated interactions in the structure of the nucleosome core particle at 1.9 a resolution.
Davey CA; Sargent DF; Luger K; Maeder AW; Richmond TJ
J Mol Biol; 2002 Jun; 319(5):1097-113. PubMed ID: 12079350
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
