518 related articles for article (PubMed ID: 22231483)
1. De novo assembly and genotyping of variants using colored de Bruijn graphs.
Iqbal Z; Caccamo M; Turner I; Flicek P; McVean G
Nat Genet; 2012 Jan; 44(2):226-32. PubMed ID: 22231483
[TBL] [Abstract][Full Text] [Related]
2. Succinct colored de Bruijn graphs.
Muggli MD; Bowe A; Noyes NR; Morley PS; Belk KE; Raymond R; Gagie T; Puglisi SJ; Boucher C
Bioinformatics; 2017 Oct; 33(20):3181-3187. PubMed ID: 28200001
[TBL] [Abstract][Full Text] [Related]
3. Population-scale detection of non-reference sequence variants using colored de Bruijn graphs.
Krannich T; White WTJ; Niehus S; Holley G; Halldórsson BV; Kehr B
Bioinformatics; 2022 Jan; 38(3):604-611. PubMed ID: 34726732
[TBL] [Abstract][Full Text] [Related]
4. Integrating long-range connectivity information into de Bruijn graphs.
Turner I; Garimella KV; Iqbal Z; McVean G
Bioinformatics; 2018 Aug; 34(15):2556-2565. PubMed ID: 29554215
[TBL] [Abstract][Full Text] [Related]
5. Benchmarking of de novo assembly algorithms for Nanopore data reveals optimal performance of OLC approaches.
Cherukuri Y; Janga SC
BMC Genomics; 2016 Aug; 17 Suppl 7(Suppl 7):507. PubMed ID: 27556636
[TBL] [Abstract][Full Text] [Related]
6. Detection of simple and complex de novo mutations with multiple reference sequences.
Garimella KV; Iqbal Z; Krause MA; Campino S; Kekre M; Drury E; Kwiatkowski D; Sá JM; Wellems TE; McVean G
Genome Res; 2020 Aug; 30(8):1154-1169. PubMed ID: 32817236
[TBL] [Abstract][Full Text] [Related]
7. Multiplex de Bruijn graphs enable genome assembly from long, high-fidelity reads.
Bankevich A; Bzikadze AV; Kolmogorov M; Antipov D; Pevzner PA
Nat Biotechnol; 2022 Jul; 40(7):1075-1081. PubMed ID: 35228706
[TBL] [Abstract][Full Text] [Related]
8. Graphtyper enables population-scale genotyping using pangenome graphs.
Eggertsson HP; Jonsson H; Kristmundsdottir S; Hjartarson E; Kehr B; Masson G; Zink F; Hjorleifsson KE; Jonasdottir A; Jonasdottir A; Jonsdottir I; Gudbjartsson DF; Melsted P; Stefansson K; Halldorsson BV
Nat Genet; 2017 Nov; 49(11):1654-1660. PubMed ID: 28945251
[TBL] [Abstract][Full Text] [Related]
9. Efficient de novo assembly of large genomes using compressed data structures.
Simpson JT; Durbin R
Genome Res; 2012 Mar; 22(3):549-56. PubMed ID: 22156294
[TBL] [Abstract][Full Text] [Related]
10. Assembly of long error-prone reads using de Bruijn graphs.
Lin Y; Yuan J; Kolmogorov M; Shen MW; Chaisson M; Pevzner PA
Proc Natl Acad Sci U S A; 2016 Dec; 113(52):E8396-E8405. PubMed ID: 27956617
[TBL] [Abstract][Full Text] [Related]
11. On the representation of de Bruijn graphs.
Chikhi R; Limasset A; Jackman S; Simpson JT; Medvedev P
J Comput Biol; 2015 May; 22(5):336-52. PubMed ID: 25629448
[TBL] [Abstract][Full Text] [Related]
12. Comparative analysis of de novo assemblers for variation discovery in personal genomes.
Tian S; Yan H; Klee EW; Kalmbach M; Slager SL
Brief Bioinform; 2018 Sep; 19(5):893-904. PubMed ID: 28407084
[TBL] [Abstract][Full Text] [Related]
13. Clover: a clustering-oriented de novo assembler for Illumina sequences.
Hsieh MF; Lu CL; Tang CY
BMC Bioinformatics; 2020 Nov; 21(1):528. PubMed ID: 33203354
[TBL] [Abstract][Full Text] [Related]
14. MetaVelvet: an extension of Velvet assembler to de novo metagenome assembly from short sequence reads.
Namiki T; Hachiya T; Tanaka H; Sakakibara Y
Nucleic Acids Res; 2012 Nov; 40(20):e155. PubMed ID: 22821567
[TBL] [Abstract][Full Text] [Related]
15. MegaGTA: a sensitive and accurate metagenomic gene-targeted assembler using iterative de Bruijn graphs.
Li D; Huang Y; Leung CM; Luo R; Ting HF; Lam TW
BMC Bioinformatics; 2017 Oct; 18(Suppl 12):408. PubMed ID: 29072142
[TBL] [Abstract][Full Text] [Related]
16. dipSPAdes: Assembler for Highly Polymorphic Diploid Genomes.
Safonova Y; Bankevich A; Pevzner PA
J Comput Biol; 2015 Jun; 22(6):528-45. PubMed ID: 25734602
[TBL] [Abstract][Full Text] [Related]
17. NeatFreq: reference-free data reduction and coverage normalization for De Novo sequence assembly.
McCorrison JM; Venepally P; Singh I; Fouts DE; Lasken RS; Methé BA
BMC Bioinformatics; 2014 Nov; 15(1):357. PubMed ID: 25407910
[TBL] [Abstract][Full Text] [Related]
18. Cuttlefish: fast, parallel and low-memory compaction of de Bruijn graphs from large-scale genome collections.
Khan J; Patro R
Bioinformatics; 2021 Jul; 37(Suppl_1):i177-i186. PubMed ID: 34252958
[TBL] [Abstract][Full Text] [Related]
19. NovoGraph: Human genome graph construction from multiple long-read
Biederstedt E; Oliver JC; Hansen NF; Jajoo A; Dunn N; Olson A; Busby B; Dilthey AT
F1000Res; 2018; 7():1391. PubMed ID: 30613392
[TBL] [Abstract][Full Text] [Related]
20. Efficient parallel and out of core algorithms for constructing large bi-directed de Bruijn graphs.
Kundeti VK; Rajasekaran S; Dinh H; Vaughn M; Thapar V
BMC Bioinformatics; 2010 Nov; 11():560. PubMed ID: 21078174
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]