BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

328 related articles for article (PubMed ID: 22232676)

  • 1. Digital RNA sequencing minimizes sequence-dependent bias and amplification noise with optimized single-molecule barcodes.
    Shiroguchi K; Jia TZ; Sims PA; Xie XS
    Proc Natl Acad Sci U S A; 2012 Jan; 109(4):1347-52. PubMed ID: 22232676
    [TBL] [Abstract][Full Text] [Related]  

  • 2. The efficacy and further functional advantages of random-base molecular barcodes for absolute and digital quantification of nucleic acid molecules.
    Ogawa T; Kryukov K; Imanishi T; Shiroguchi K
    Sci Rep; 2017 Oct; 7(1):13576. PubMed ID: 29051542
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Single molecule counting and assessment of random molecular tagging errors with transposable giga-scale error-correcting barcodes.
    Lau BT; Ji HP
    BMC Genomics; 2017 Sep; 18(1):745. PubMed ID: 28934929
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Application of Stochastic Labeling with Random-Sequence Barcodes for Simultaneous Quantification and Sequencing of Environmental 16S rRNA Genes.
    Hoshino T; Inagaki F
    PLoS One; 2017; 12(1):e0169431. PubMed ID: 28052139
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Biases in small RNA deep sequencing data.
    Raabe CA; Tang TH; Brosius J; Rozhdestvensky TS
    Nucleic Acids Res; 2014 Feb; 42(3):1414-26. PubMed ID: 24198247
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Quantifying RNA allelic ratios by microfluidic multiplex PCR and sequencing.
    Zhang R; Li X; Ramaswami G; Smith KS; Turecki G; Montgomery SB; Li JB
    Nat Methods; 2014 Jan; 11(1):51-4. PubMed ID: 24270603
    [TBL] [Abstract][Full Text] [Related]  

  • 7. dropEst: pipeline for accurate estimation of molecular counts in droplet-based single-cell RNA-seq experiments.
    Petukhov V; Guo J; Baryawno N; Severe N; Scadden DT; Samsonova MG; Kharchenko PV
    Genome Biol; 2018 Jun; 19(1):78. PubMed ID: 29921301
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Single read and paired end mRNA-Seq Illumina libraries from 10 nanograms total RNA.
    Sengupta S; Bolin JM; Ruotti V; Nguyen BK; Thomson JA; Elwell AL; Stewart R
    J Vis Exp; 2011 Oct; (56):e3340. PubMed ID: 22064688
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Quantitative single-cell RNA-seq with unique molecular identifiers.
    Islam S; Zeisel A; Joost S; La Manno G; Zajac P; Kasper M; Lönnerberg P; Linnarsson S
    Nat Methods; 2014 Feb; 11(2):163-6. PubMed ID: 24363023
    [TBL] [Abstract][Full Text] [Related]  

  • 10. BARCOSEL: a tool for selecting an optimal barcode set for high-throughput sequencing.
    Somervuo P; Koskinen P; Mei P; Holm L; Auvinen P; Paulin L
    BMC Bioinformatics; 2018 Jul; 19(1):257. PubMed ID: 29976145
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Quantification of differential gene expression by multiplexed targeted resequencing of cDNA.
    Arts P; van der Raadt J; van Gestel SHC; Steehouwer M; Shendure J; Hoischen A; Albers CA
    Nat Commun; 2017 May; 8():15190. PubMed ID: 28474677
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Primer ID Validates Template Sampling Depth and Greatly Reduces the Error Rate of Next-Generation Sequencing of HIV-1 Genomic RNA Populations.
    Zhou S; Jones C; Mieczkowski P; Swanstrom R
    J Virol; 2015 Aug; 89(16):8540-55. PubMed ID: 26041299
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Methods for small RNA preparation for digital gene expression profiling by next-generation sequencing.
    Linsen SE; Cuppen E
    Methods Mol Biol; 2012; 822():205-17. PubMed ID: 22144201
    [TBL] [Abstract][Full Text] [Related]  

  • 14. RNA sequencing and quantitation using the Helicos Genetic Analysis System.
    Raz T; Causey M; Jones DR; Kieu A; Letovsky S; Lipson D; Thayer E; Thompson JF; Milos PM
    Methods Mol Biol; 2011; 733():37-49. PubMed ID: 21431761
    [TBL] [Abstract][Full Text] [Related]  

  • 15. High-resolution transcriptome analysis with long-read RNA sequencing.
    Cho H; Davis J; Li X; Smith KS; Battle A; Montgomery SB
    PLoS One; 2014; 9(9):e108095. PubMed ID: 25251678
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Suppression of artifacts and barcode bias in high-throughput transcriptome analyses utilizing template switching.
    Tang DT; Plessy C; Salimullah M; Suzuki AM; Calligaris R; Gustincich S; Carninci P
    Nucleic Acids Res; 2013 Feb; 41(3):e44. PubMed ID: 23180801
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Next-generation DNA barcoding: using next-generation sequencing to enhance and accelerate DNA barcode capture from single specimens.
    Shokralla S; Gibson JF; Nikbakht H; Janzen DH; Hallwachs W; Hajibabaei M
    Mol Ecol Resour; 2014 Sep; 14(5):892-901. PubMed ID: 24641208
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Reducing amplification artifacts in high multiplex amplicon sequencing by using molecular barcodes.
    Peng Q; Vijaya Satya R; Lewis M; Randad P; Wang Y
    BMC Genomics; 2015 Aug; 16(1):589. PubMed ID: 26248467
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Uncoupling of sgRNAs from their associated barcodes during PCR amplification of combinatorial CRISPR screens.
    Hegde M; Strand C; Hanna RE; Doench JG
    PLoS One; 2018; 13(5):e0197547. PubMed ID: 29799876
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Peregrine: A rapid and unbiased method to produce strand-specific RNA-Seq libraries from small quantities of starting material.
    Langevin SA; Bent ZW; Solberg OD; Curtis DJ; Lane PD; Williams KP; Schoeniger JS; Sinha A; Lane TW; Branda SS
    RNA Biol; 2013 Apr; 10(4):502-15. PubMed ID: 23558773
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 17.