These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

193 related articles for article (PubMed ID: 22244497)

  • 1. BarraCUDA - a fast short read sequence aligner using graphics processing units.
    Klus P; Lam S; Lyberg D; Cheung MS; Pullan G; McFarlane I; Yeo GSh; Lam BY
    BMC Res Notes; 2012 Jan; 5():27. PubMed ID: 22244497
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Genetically improved BarraCUDA.
    Langdon WB; Lam BYH
    BioData Min; 2017; 10():28. PubMed ID: 28785314
    [TBL] [Abstract][Full Text] [Related]  

  • 3. MICA: A fast short-read aligner that takes full advantage of Many Integrated Core Architecture (MIC).
    Luo R; Cheung J; Wu E; Wang H; Chan SH; Law WC; He G; Yu C; Liu CM; Zhou D; Li Y; Li R; Wang J; Zhu X; Peng S; Lam TW
    BMC Bioinformatics; 2015; 16 Suppl 7(Suppl 7):S10. PubMed ID: 25952019
    [TBL] [Abstract][Full Text] [Related]  

  • 4. High-throughput sequence alignment using Graphics Processing Units.
    Schatz MC; Trapnell C; Delcher AL; Varshney A
    BMC Bioinformatics; 2007 Dec; 8():474. PubMed ID: 18070356
    [TBL] [Abstract][Full Text] [Related]  

  • 5. CUSHAW: a CUDA compatible short read aligner to large genomes based on the Burrows-Wheeler transform.
    Liu Y; Schmidt B; Maskell DL
    Bioinformatics; 2012 Jul; 28(14):1830-7. PubMed ID: 22576173
    [TBL] [Abstract][Full Text] [Related]  

  • 6. DecGPU: distributed error correction on massively parallel graphics processing units using CUDA and MPI.
    Liu Y; Schmidt B; Maskell DL
    BMC Bioinformatics; 2011 Mar; 12():85. PubMed ID: 21447171
    [TBL] [Abstract][Full Text] [Related]  

  • 7. A parallel algorithm for error correction in high-throughput short-read data on CUDA-enabled graphics hardware.
    Shi H; Schmidt B; Liu W; Müller-Wittig W
    J Comput Biol; 2010 Apr; 17(4):603-15. PubMed ID: 20426693
    [TBL] [Abstract][Full Text] [Related]  

  • 8. GAMUT: GPU accelerated microRNA analysis to uncover target genes through CUDA-miRanda.
    Wang S; Kim J; Jiang X; Brunner SF; Ohno-Machado L
    BMC Med Genomics; 2014; 7 Suppl 1(Suppl 1):S9. PubMed ID: 25077821
    [TBL] [Abstract][Full Text] [Related]  

  • 9. WFA-GPU: gap-affine pairwise read-alignment using GPUs.
    Aguado-Puig Q; Doblas M; Matzoros C; Espinosa A; Moure JC; Marco-Sola S; Moreto M
    Bioinformatics; 2023 Dec; 39(12):. PubMed ID: 37975878
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Arioc: High-concurrency short-read alignment on multiple GPUs.
    Wilton R; Szalay AS
    PLoS Comput Biol; 2020 Nov; 16(11):e1008383. PubMed ID: 33166275
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Accelerating Minimap2 for Accurate Long Read Alignment on GPUs.
    Sadasivan H; Maric M; Dawson E; Iyer V; Israeli J; Narayanasamy S
    J Biotechnol Biomed; 2023; 6(1):13-23. PubMed ID: 36937168
    [TBL] [Abstract][Full Text] [Related]  

  • 12. SOAP3-dp: fast, accurate and sensitive GPU-based short read aligner.
    Luo R; Wong T; Zhu J; Liu CM; Zhu X; Wu E; Lee LK; Lin H; Zhu W; Cheung DW; Ting HF; Yiu SM; Peng S; Yu C; Li Y; Li R; Lam TW
    PLoS One; 2013; 8(5):e65632. PubMed ID: 23741504
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Faster single-end alignment generation utilizing multi-thread for BWA.
    Jo H; Koh G
    Biomed Mater Eng; 2015; 26 Suppl 1():S1791-6. PubMed ID: 26405948
    [TBL] [Abstract][Full Text] [Related]  

  • 14. NMF-mGPU: non-negative matrix factorization on multi-GPU systems.
    Mejía-Roa E; Tabas-Madrid D; Setoain J; García C; Tirado F; Pascual-Montano A
    BMC Bioinformatics; 2015 Feb; 16():43. PubMed ID: 25887585
    [TBL] [Abstract][Full Text] [Related]  

  • 15. A fast read alignment method based on seed-and-vote for next generation sequencing.
    Liu S; Wang Y; Wang F
    BMC Bioinformatics; 2016 Dec; 17(Suppl 17):466. PubMed ID: 28155631
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Ψ-RA: a parallel sparse index for genomic read alignment.
    Oğuzhan Külekci M; Hon WK; Shah R; Scott Vitter J; Xu B
    BMC Genomics; 2011; 12 Suppl 2(Suppl 2):S7. PubMed ID: 21989248
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Arioc: GPU-accelerated alignment of short bisulfite-treated reads.
    Wilton R; Li X; Feinberg AP; Szalay AS
    Bioinformatics; 2018 Aug; 34(15):2673-2675. PubMed ID: 29554207
    [TBL] [Abstract][Full Text] [Related]  

  • 18. High performance computing for deformable image registration: towards a new paradigm in adaptive radiotherapy.
    Samant SS; Xia J; Muyan-Ozcelik P; Owens JD
    Med Phys; 2008 Aug; 35(8):3546-53. PubMed ID: 18777915
    [TBL] [Abstract][Full Text] [Related]  

  • 19. ViraPipe: scalable parallel pipeline for viral metagenome analysis from next generation sequencing reads.
    Maarala AI; Bzhalava Z; Dillner J; Heljanko K; Bzhalava D
    Bioinformatics; 2018 Mar; 34(6):928-935. PubMed ID: 29106455
    [TBL] [Abstract][Full Text] [Related]  

  • 20. B-MIC: An Ultrafast Three-Level Parallel Sequence Aligner Using MIC.
    Cui Y; Liao X; Zhu X; Wang B; Peng S
    Interdiscip Sci; 2016 Mar; 8(1):28-34. PubMed ID: 26358141
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.