These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

105 related articles for article (PubMed ID: 22255823)

  • 1. MEET: motif elements estimation toolkit.
    Pairó E; Maynou J; Vallverdú M; Caminal P; Marco S; Perera A
    Annu Int Conf IEEE Eng Med Biol Soc; 2011; 2011():6483-6. PubMed ID: 22255823
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Regulatory motif finding by logic regression.
    Keles S; van der Laan MJ; Vulpe C
    Bioinformatics; 2004 Nov; 20(16):2799-811. PubMed ID: 15166027
    [TBL] [Abstract][Full Text] [Related]  

  • 3. PhyloGibbs: a Gibbs sampling motif finder that incorporates phylogeny.
    Siddharthan R; Siggia ED; van Nimwegen E
    PLoS Comput Biol; 2005 Dec; 1(7):e67. PubMed ID: 16477324
    [TBL] [Abstract][Full Text] [Related]  

  • 4. An algorithm for finding protein-DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments.
    Liu XS; Brutlag DL; Liu JS
    Nat Biotechnol; 2002 Aug; 20(8):835-9. PubMed ID: 12101404
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Tmod: toolbox of motif discovery.
    Sun H; Yuan Y; Wu Y; Liu H; Liu JS; Xie H
    Bioinformatics; 2010 Feb; 26(3):405-7. PubMed ID: 20007740
    [TBL] [Abstract][Full Text] [Related]  

  • 6. STAMP: a web tool for exploring DNA-binding motif similarities.
    Mahony S; Benos PV
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W253-8. PubMed ID: 17478497
    [TBL] [Abstract][Full Text] [Related]  

  • 7. SCOPE: a web server for practical de novo motif discovery.
    Carlson JM; Chakravarty A; DeZiel CE; Gross RH
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W259-64. PubMed ID: 17485471
    [TBL] [Abstract][Full Text] [Related]  

  • 8. MEME: discovering and analyzing DNA and protein sequence motifs.
    Bailey TL; Williams N; Misleh C; Li WW
    Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W369-73. PubMed ID: 16845028
    [TBL] [Abstract][Full Text] [Related]  

  • 9. transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences.
    Bininda-Emonds OR
    BMC Bioinformatics; 2005 Jun; 6():156. PubMed ID: 15969769
    [TBL] [Abstract][Full Text] [Related]  

  • 10. HIGEDA: a hierarchical gene-set genetics based algorithm for finding subtle motifs in biological sequences.
    Le T; Altman T; Gardiner K
    Bioinformatics; 2010 Feb; 26(3):302-9. PubMed ID: 19996163
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Ab initio identification of putative human transcription factor binding sites by comparative genomics.
    Corà D; Herrmann C; Dieterich C; Di Cunto F; Provero P; Caselle M
    BMC Bioinformatics; 2005 May; 6():110. PubMed ID: 15865625
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Transcription factor binding site detection through position cross-mutual information variability analysis.
    Maynou J; Vallverdu M; Claria F; Gallardo-Chacon JJ; Caminal P; Perera A
    Annu Int Conf IEEE Eng Med Biol Soc; 2009; 2009():7087-90. PubMed ID: 19963941
    [TBL] [Abstract][Full Text] [Related]  

  • 13. MAPPER: a search engine for the computational identification of putative transcription factor binding sites in multiple genomes.
    Marinescu VD; Kohane IS; Riva A
    BMC Bioinformatics; 2005 Mar; 6():79. PubMed ID: 15799782
    [TBL] [Abstract][Full Text] [Related]  

  • 14. MEME SUITE: tools for motif discovery and searching.
    Bailey TL; Boden M; Buske FA; Frith M; Grant CE; Clementi L; Ren J; Li WW; Noble WS
    Nucleic Acids Res; 2009 Jul; 37(Web Server issue):W202-8. PubMed ID: 19458158
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Condition specific transcription factor binding site characterization in Saccharomyces cerevisiae.
    Harrison R; DeLisi C
    Bioinformatics; 2002 Oct; 18(10):1289-96. PubMed ID: 12376372
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Discovering sequence motifs.
    Bailey TL
    Methods Mol Biol; 2008; 452():231-51. PubMed ID: 18566768
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Sequence information gain based motif analysis.
    Maynou J; Pairó E; Marco S; Perera A
    BMC Bioinformatics; 2015 Nov; 16():377. PubMed ID: 26553056
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Accurate anchoring alignment of divergent sequences.
    Huang W; Umbach DM; Li L
    Bioinformatics; 2006 Jan; 22(1):29-34. PubMed ID: 16301203
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Genetic Interaction Motif Finding by expectation maximization--a novel statistical model for inferring gene modules from synthetic lethality.
    Qi Y; Ye P; Bader JS
    BMC Bioinformatics; 2005 Dec; 6():288. PubMed ID: 16332255
    [TBL] [Abstract][Full Text] [Related]  

  • 20. MODSIDE: a motif discovery pipeline and similarity detector.
    Tran NTL; Huang CH
    BMC Genomics; 2018 Oct; 19(1):755. PubMed ID: 30340511
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.