BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

180 related articles for article (PubMed ID: 22258275)

  • 1. Prediction of hot spots in protein interfaces using a random forest model with hybrid features.
    Wang L; Liu ZP; Zhang XS; Chen L
    Protein Eng Des Sel; 2012 Mar; 25(3):119-26. PubMed ID: 22258275
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Identification of computational hot spots in protein interfaces: combining solvent accessibility and inter-residue potentials improves the accuracy.
    Tuncbag N; Gursoy A; Keskin O
    Bioinformatics; 2009 Jun; 25(12):1513-20. PubMed ID: 19357097
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Prediction of RNA-binding residues in proteins from primary sequence using an enriched random forest model with a novel hybrid feature.
    Ma X; Guo J; Wu J; Liu H; Yu J; Xie J; Sun X
    Proteins; 2011 Apr; 79(4):1230-9. PubMed ID: 21268114
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Prediction of protein-RNA binding sites by a random forest method with combined features.
    Liu ZP; Wu LY; Wang Y; Zhang XS; Chen L
    Bioinformatics; 2010 Jul; 26(13):1616-22. PubMed ID: 20483814
    [TBL] [Abstract][Full Text] [Related]  

  • 5. An automated decision-tree approach to predicting protein interaction hot spots.
    Darnell SJ; Page D; Mitchell JC
    Proteins; 2007 Sep; 68(4):813-23. PubMed ID: 17554779
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Protein-protein interactions; coupling of structurally conserved residues and of hot spots across interfaces. Implications for docking.
    Halperin I; Wolfson H; Nussinov R
    Structure; 2004 Jun; 12(6):1027-38. PubMed ID: 15274922
    [TBL] [Abstract][Full Text] [Related]  

  • 7. APIS: accurate prediction of hot spots in protein interfaces by combining protrusion index with solvent accessibility.
    Xia JF; Zhao XM; Song J; Huang DS
    BMC Bioinformatics; 2010 Apr; 11():174. PubMed ID: 20377884
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Statistical geometry based prediction of nonsynonymous SNP functional effects using random forest and neuro-fuzzy classifiers.
    Barenboim M; Masso M; Vaisman II; Jamison DC
    Proteins; 2008 Jun; 71(4):1930-9. PubMed ID: 18186470
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Hot spot occlusion from bulk water: a comprehensive study of the complex between the lysozyme HEL and the antibody FVD1.3.
    Moreira IS; Fernandes PA; Ramos MJ
    J Phys Chem B; 2007 Mar; 111(10):2697-706. PubMed ID: 17315919
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Prediction of protein interaction hot spots using rough set-based multiple criteria linear programming.
    Chen R; Zhang Z; Wu D; Zhang P; Zhang X; Wang Y; Shi Y
    J Theor Biol; 2011 Jan; 269(1):174-80. PubMed ID: 21035465
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Propensity vectors of low-ASA residue pairs in the distinction of protein interactions.
    Liu Q; Li J
    Proteins; 2010 Feb; 78(3):589-602. PubMed ID: 19768686
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Molecular dynamics simulations of a calmodulin-peptide complex in solution.
    Yang C; Kuczera K
    J Biomol Struct Dyn; 2002 Oct; 20(2):179-97. PubMed ID: 12354070
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Geometrically centered region: a "wet" model of protein binding hot spots not excluding water molecules.
    Li Z; Li J
    Proteins; 2010 Dec; 78(16):3304-16. PubMed ID: 20818601
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Investigating the high affinity and low sequence specificity of calmodulin binding to its targets.
    Afshar M; Caves LS; Guimard L; Hubbard RE; Calas B; Grassy G; Haiech J
    J Mol Biol; 1994 Dec; 244(5):554-71. PubMed ID: 7990140
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Hot regions in protein--protein interactions: the organization and contribution of structurally conserved hot spot residues.
    Keskin O; Ma B; Nussinov R
    J Mol Biol; 2005 Feb; 345(5):1281-94. PubMed ID: 15644221
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Dissection of binding interactions in the complex between the anti-lysozyme antibody HyHEL-63 and its antigen.
    Li Y; Urrutia M; Smith-Gill SJ; Mariuzza RA
    Biochemistry; 2003 Jan; 42(1):11-22. PubMed ID: 12515535
    [TBL] [Abstract][Full Text] [Related]  

  • 17. A feature-based approach to modeling protein-protein interaction hot spots.
    Cho KI; Kim D; Lee D
    Nucleic Acids Res; 2009 May; 37(8):2672-87. PubMed ID: 19273533
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Anatomy of hot spots in protein interfaces.
    Bogan AA; Thorn KS
    J Mol Biol; 1998 Jul; 280(1):1-9. PubMed ID: 9653027
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Prediction of hot spot residues at protein-protein interfaces by combining machine learning and energy-based methods.
    Lise S; Archambeau C; Pontil M; Jones DT
    BMC Bioinformatics; 2009 Oct; 10():365. PubMed ID: 19878545
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Residue frequencies and pairing preferences at protein-protein interfaces.
    Glaser F; Steinberg DM; Vakser IA; Ben-Tal N
    Proteins; 2001 May; 43(2):89-102. PubMed ID: 11276079
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.