These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
109 related articles for article (PubMed ID: 22268599)
41. Unusual metal specificity and structure of the group I ribozyme from Chlamydomonas reinhardtii 23S rRNA. Kuo TC; Odom OW; Herrin DL FEBS J; 2006 Jun; 273(12):2631-44. PubMed ID: 16817892 [TBL] [Abstract][Full Text] [Related]
43. Structure and activity of the hairpin ribozyme in its natural junction conformation: effect of metal ions. Walter F; Murchie AI; Thomson JB; Lilley DM Biochemistry; 1998 Oct; 37(40):14195-203. PubMed ID: 9760257 [TBL] [Abstract][Full Text] [Related]
44. Theoretical studies of RNA catalysis: hybrid QM/MM methods and their comparison with MD and QM. Banás P; Jurecka P; Walter NG; Sponer J; Otyepka M Methods; 2009 Oct; 49(2):202-16. PubMed ID: 19398008 [TBL] [Abstract][Full Text] [Related]
45. Metal ions and RNA folding: a highly charged topic with a dynamic future. Woodson SA Curr Opin Chem Biol; 2005 Apr; 9(2):104-9. PubMed ID: 15811793 [TBL] [Abstract][Full Text] [Related]
46. Structure, dynamics, and function of the hammerhead ribozyme in bulk water and at a clay mineral surface from replica exchange molecular dynamics. Swadling JB; Wright DW; Suter JL; Coveney PV Langmuir; 2015 Mar; 31(8):2493-501. PubMed ID: 25647546 [TBL] [Abstract][Full Text] [Related]
47. Mg(2+)-dependent conformational changes in the hammerhead ribozyme. Menger M; Tuschl T; Eckstein F; Porschke D Biochemistry; 1996 Nov; 35(47):14710-6. PubMed ID: 8942631 [TBL] [Abstract][Full Text] [Related]
48. Molecular dynamics simulation study of the "stay or leave" problem for two magnesium ions in gene transcription. Wu S Proteins; 2017 Jun; 85(6):1002-1007. PubMed ID: 28205291 [TBL] [Abstract][Full Text] [Related]
49. Exploring the Role of the Third Active Site Metal Ion in DNA Polymerase η with QM/MM Free Energy Simulations. Stevens DR; Hammes-Schiffer S J Am Chem Soc; 2018 Jul; 140(28):8965-8969. PubMed ID: 29932331 [TBL] [Abstract][Full Text] [Related]
50. Structure-guided engineering of the regioselectivity of RNA ligase ribozymes. Pitt JN; Ferré-D'Amaré AR J Am Chem Soc; 2009 Mar; 131(10):3532-40. PubMed ID: 19220054 [TBL] [Abstract][Full Text] [Related]
51. Pressure-temperature control of activity of RNA polymerase ribozyme. Takahashi S; Sugimoto N Biophys Chem; 2023 Jan; 292():106914. PubMed ID: 36327693 [TBL] [Abstract][Full Text] [Related]
52. Catalytic mechanism and pH dependence of a methyltransferase ribozyme (MTR1) from computational enzymology. McCarthy E; Ekesan Ş; Giese TJ; Wilson TJ; Deng J; Huang L; Lilley DMJ; York DM Nucleic Acids Res; 2023 May; 51(9):4508-4518. PubMed ID: 37070188 [TBL] [Abstract][Full Text] [Related]
53. CHARMM force field parameters for simulation of reactive intermediates in native and thio-substituted ribozymes. Mayaan E; Moser A; MacKerell AD; York DM J Comput Chem; 2007 Jan; 28(2):495-507. PubMed ID: 17186477 [TBL] [Abstract][Full Text] [Related]
54. Co-operation between Polymerases and Nucleotide Synthetases in the RNA World. Kim YE; Higgs PG PLoS Comput Biol; 2016 Nov; 12(11):e1005161. PubMed ID: 27820829 [TBL] [Abstract][Full Text] [Related]
55. Structural and catalytic roles for divalent magnesium in nucleic acid biochemistry. Sreedhara A; Cowan JA Biometals; 2002 Sep; 15(3):211-23. PubMed ID: 12206388 [No Abstract] [Full Text] [Related]
56. Identification of dynamical hinge points of the L1 ligase molecular switch. Giambasu GM; Lee TS; Sosa CP; Robertson MP; Scott WG; York DM RNA; 2010 Apr; 16(4):769-80. PubMed ID: 20167653 [TBL] [Abstract][Full Text] [Related]
57. Role of structural ions on the dynamics of the Pseudomonas fluorescens 07A metalloprotease. Polêto MD; Alves MP; Ligabue-Braun R; Eller MR; De Carvalho AF Food Chem; 2019 Jul; 286():309-315. PubMed ID: 30827612 [TBL] [Abstract][Full Text] [Related]
58. Can multiscale simulations unravel the function of metallo-enzymes to improve knowledge-based drug discovery? Sgrignani J; Casalino L; Doro F; Spinello A; Magistrato A Future Med Chem; 2019 Apr; 11(7):771-791. PubMed ID: 30938544 [TBL] [Abstract][Full Text] [Related]
59. Cations in motion: QM/MM studies of the dynamic and electrostatic roles of H Berta D; Buigues PJ; Badaoui M; Rosta E Curr Opin Struct Biol; 2020 Apr; 61():198-206. PubMed ID: 32065923 [TBL] [Abstract][Full Text] [Related]
60. Molecular Anatomy of the Class I Ligase Ribozyme for Elucidation of the Activity-Generating Unit. Kasuga M; Mutsuro-Aoki H; Ando T; Tamura K Biology (Basel); 2023 Jul; 12(7):. PubMed ID: 37508441 [TBL] [Abstract][Full Text] [Related] [Previous] [Next] [New Search]