BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

222 related articles for article (PubMed ID: 22268964)

  • 1. ProBiS-database: precalculated binding site similarities and local pairwise alignments of PDB structures.
    Konc J; Cesnik T; Konc JT; Penca M; Janežič D
    J Chem Inf Model; 2012 Feb; 52(2):604-12. PubMed ID: 22268964
    [TBL] [Abstract][Full Text] [Related]  

  • 2. ProBiS-2012: web server and web services for detection of structurally similar binding sites in proteins.
    Konc J; Janezic D
    Nucleic Acids Res; 2012 Jul; 40(Web Server issue):W214-21. PubMed ID: 22600737
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Parallel-ProBiS: fast parallel algorithm for local structural comparison of protein structures and binding sites.
    Konc J; Depolli M; Trobec R; Rozman K; Janežič D
    J Comput Chem; 2012 Oct; 33(27):2199-203. PubMed ID: 22718529
    [TBL] [Abstract][Full Text] [Related]  

  • 4. ProBiS algorithm for detection of structurally similar protein binding sites by local structural alignment.
    Konc J; Janezic D
    Bioinformatics; 2010 May; 26(9):1160-8. PubMed ID: 20305268
    [TBL] [Abstract][Full Text] [Related]  

  • 5. ProBiS-Fold Approach for Annotation of Human Structures from the AlphaFold Database with No Corresponding Structure in the PDB to Discover New Druggable Binding Sites.
    Konc J; Janežič D
    J Chem Inf Model; 2022 Nov; 62(22):5821-5829. PubMed ID: 36269348
    [TBL] [Abstract][Full Text] [Related]  

  • 6. ProBiS tools (algorithm, database, and web servers) for predicting and modeling of biologically interesting proteins.
    Konc J; Janežič D
    Prog Biophys Mol Biol; 2017 Sep; 128():24-32. PubMed ID: 28212856
    [TBL] [Abstract][Full Text] [Related]  

  • 7. ProBiS-CHARMMing: Web Interface for Prediction and Optimization of Ligands in Protein Binding Sites.
    Konc J; Miller BT; Štular T; Lešnik S; Woodcock HL; Brooks BR; Janežič D
    J Chem Inf Model; 2015 Nov; 55(11):2308-14. PubMed ID: 26509288
    [TBL] [Abstract][Full Text] [Related]  

  • 8. ProBiS: a web server for detection of structurally similar protein binding sites.
    Konc J; Janezic D
    Nucleic Acids Res; 2010 Jul; 38(Web Server issue):W436-40. PubMed ID: 20504855
    [TBL] [Abstract][Full Text] [Related]  

  • 9. ProBiS-ligands: a web server for prediction of ligands by examination of protein binding sites.
    Konc J; Janežič D
    Nucleic Acids Res; 2014 Jul; 42(Web Server issue):W215-20. PubMed ID: 24861616
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Identification of Conserved Water Sites in Protein Structures for Drug Design.
    Jukič M; Konc J; Gobec S; Janežič D
    J Chem Inf Model; 2017 Dec; 57(12):3094-3103. PubMed ID: 29155577
    [TBL] [Abstract][Full Text] [Related]  

  • 11. ProBiS-Dock Database: A Web Server and Interactive Web Repository of Small Ligand-Protein Binding Sites for Drug Design.
    Konc J; Lešnik S; Škrlj B; Janežič D
    J Chem Inf Model; 2021 Aug; 61(8):4097-4107. PubMed ID: 34319727
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Pre-calculated protein structure alignments at the RCSB PDB website.
    Prlic A; Bliven S; Rose PW; Bluhm WF; Bizon C; Godzik A; Bourne PE
    Bioinformatics; 2010 Dec; 26(23):2983-5. PubMed ID: 20937596
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Flexible Structural Neighborhood--a database of protein structural similarities and alignments.
    Li Z; Ye Y; Godzik A
    Nucleic Acids Res; 2006 Jan; 34(Database issue):D277-80. PubMed ID: 16381864
    [TBL] [Abstract][Full Text] [Related]  

  • 14. DMAPS: a database of multiple alignments for protein structures.
    Guda C; Pal LR; Shindyalov IN
    Nucleic Acids Res; 2006 Jan; 34(Database issue):D273-6. PubMed ID: 16381863
    [TBL] [Abstract][Full Text] [Related]  

  • 15. ProBiS-Dock: A Hybrid Multitemplate Homology Flexible Docking Algorithm Enabled by Protein Binding Site Comparison.
    Konc J; Lešnik S; Škrlj B; Sova M; Proj M; Knez D; Gobec S; Janežič D
    J Chem Inf Model; 2022 Mar; 62(6):1573-1584. PubMed ID: 35289616
    [TBL] [Abstract][Full Text] [Related]  

  • 16. The ConSurf-HSSP database: the mapping of evolutionary conservation among homologs onto PDB structures.
    Glaser F; Rosenberg Y; Kessel A; Pupko T; Ben-Tal N
    Proteins; 2005 Feb; 58(3):610-7. PubMed ID: 15614759
    [TBL] [Abstract][Full Text] [Related]  

  • 17. FATCAT: a web server for flexible structure comparison and structure similarity searching.
    Ye Y; Godzik A
    Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W582-5. PubMed ID: 15215455
    [TBL] [Abstract][Full Text] [Related]  

  • 18. PhyreStorm: A Web Server for Fast Structural Searches Against the PDB.
    Mezulis S; Sternberg MJE; Kelley LA
    J Mol Biol; 2016 Feb; 428(4):702-708. PubMed ID: 26517951
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Protein binding sites for drug design.
    Konc J; Janežič D
    Biophys Rev; 2022 Dec; 14(6):1413-1421. PubMed ID: 36532870
    [TBL] [Abstract][Full Text] [Related]  

  • 20. GenProBiS: web server for mapping of sequence variants to protein binding sites.
    Konc J; Skrlj B; Erzen N; Kunej T; Janezic D
    Nucleic Acids Res; 2017 Jul; 45(W1):W253-W259. PubMed ID: 28498966
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.