136 related articles for article (PubMed ID: 22270716)
1. A computational proposal for the experimentally observed discriminatory behavior of hypoxanthine, a weak universal nucleobase.
Rutledge LR; Wetmore SD
Phys Chem Chem Phys; 2012 Feb; 14(8):2743-53. PubMed ID: 22270716
[TBL] [Abstract][Full Text] [Related]
2. A computational characterization of the hydrogen-bonding and stacking interactions of hypoxanthine.
Rutledge LR; Wheaton CA; Wetmore SD
Phys Chem Chem Phys; 2007 Jan; 9(4):497-509. PubMed ID: 17216066
[TBL] [Abstract][Full Text] [Related]
3. How do size-expanded DNA nucleobases enhance duplex stability? Computational analysis of the hydrogen-bonding and stacking ability of xDNA bases.
McConnell TL; Wetmore SD
J Phys Chem B; 2007 Mar; 111(11):2999-3009. PubMed ID: 17388411
[TBL] [Abstract][Full Text] [Related]
4. Effect of Watson-Crick and Hoogsteen base pairing on the conformational stability of C8-phenoxyl-2'-deoxyguanosine adducts.
Millen AL; Churchill CD; Manderville RA; Wetmore SD
J Phys Chem B; 2010 Oct; 114(40):12995-3004. PubMed ID: 20853889
[TBL] [Abstract][Full Text] [Related]
5. Noncovalent interactions involving histidine: the effect of charge on pi-pi stacking and T-shaped interactions with the DNA nucleobases.
Churchill CD; Wetmore SD
J Phys Chem B; 2009 Dec; 113(49):16046-58. PubMed ID: 19904910
[TBL] [Abstract][Full Text] [Related]
6. yDNA versus xDNA pyrimidine nucleobases: computational evidence for dependence of duplex stability on spacer location.
Lait LA; Rutledge LR; Millen AL; Wetmore SD
J Phys Chem B; 2008 Oct; 112(39):12526-36. PubMed ID: 18771305
[TBL] [Abstract][Full Text] [Related]
7. yDNA versus yyDNA pyrimidines: computational analysis of the effects of unidirectional ring expansion on the preferred sugar-base orientation, hydrogen-bonding interactions and stacking abilities.
Sharma P; Lait LA; Wetmore SD
Phys Chem Chem Phys; 2013 Feb; 15(7):2435-48. PubMed ID: 23303174
[TBL] [Abstract][Full Text] [Related]
8. Cross-modulation of the pKa of nucleobases in a single-stranded hexameric-RNA due to tandem electrostatic nearest-neighbor interactions.
Acharya P; Acharya S; Cheruku P; Amirkhanov NV; Földesi A; Chattopadhyaya J
J Am Chem Soc; 2003 Aug; 125(33):9948-61. PubMed ID: 12914458
[TBL] [Abstract][Full Text] [Related]
9. Exploring the limits of nucleobase expansion: computational design of naphthohomologated (xx-) purines and comparison to the natural and xDNA purines.
Sharma P; Lait LA; Wetmore SD
Phys Chem Chem Phys; 2013 Oct; 15(37):15538-49. PubMed ID: 23942832
[TBL] [Abstract][Full Text] [Related]
10. Evaluating the contributions of desolvation and base-stacking during translesion DNA synthesis.
Zhang X; Lee I; Berdis AJ
Org Biomol Chem; 2004 Jun; 2(12):1703-11. PubMed ID: 15188037
[TBL] [Abstract][Full Text] [Related]
11. A preliminary investigation of the additivity of pi-pi or pi+-pi stacking and T-shaped interactions between natural or damaged DNA nucleobases and histidine.
Rutledge LR; Churchill CD; Wetmore SD
J Phys Chem B; 2010 Mar; 114(9):3355-67. PubMed ID: 20151654
[TBL] [Abstract][Full Text] [Related]
12. Effects of the biological backbone on DNA-protein stacking interactions.
Churchill CD; Navarro-Whyte L; Rutledge LR; Wetmore SD
Phys Chem Chem Phys; 2009 Dec; 11(45):10657-70. PubMed ID: 20145810
[TBL] [Abstract][Full Text] [Related]
13. Insights into DNA binding of ruthenium arene complexes: role of hydrogen bonding and pi stacking.
Gkionis K; Platts JA; Hill JG
Inorg Chem; 2008 May; 47(9):3893-902. PubMed ID: 18393492
[TBL] [Abstract][Full Text] [Related]
14. Environmental effects on the enhancement in natural and damaged DNA nucleobase acidity because of discrete hydrogen-bonding interactions.
Hunter KC; Wetmore SD
J Phys Chem A; 2007 Mar; 111(10):1933-42. PubMed ID: 17302396
[TBL] [Abstract][Full Text] [Related]
15. Extended weak bonding interactions in DNA: pi-stacking (base-base), base-backbone, and backbone-backbone interactions.
Matta CF; Castillo N; Boyd RJ
J Phys Chem B; 2006 Jan; 110(1):563-78. PubMed ID: 16471569
[TBL] [Abstract][Full Text] [Related]
16. Studies of DNA dumbbells. I. Melting curves of 17 DNA dumbbells with different duplex stem sequences linked by T4 endloops: evaluation of the nearest-neighbor stacking interactions in DNA.
Doktycz MJ; Goldstein RF; Paner TM; Gallo FJ; Benight AS
Biopolymers; 1992 Jul; 32(7):849-64. PubMed ID: 1391634
[TBL] [Abstract][Full Text] [Related]
17. Effect of nucleobase sequence on the proton-transfer reaction and stability of the guanine-cytosine base pair radical anion.
Chen HY; Yeh SW; Hsu SC; Kao CL; Dong TY
Phys Chem Chem Phys; 2011 Feb; 13(7):2674-81. PubMed ID: 21152551
[TBL] [Abstract][Full Text] [Related]
18. FTIR and UV spectroscopy of parallel-stranded DNAs with mixed A*T/G*C sequences and their A*T/I*C analogues.
Mohammadi S; Klement R; Shchyolkina AK; Liquier J; Jovin TM; Taillandier E
Biochemistry; 1998 Nov; 37(47):16529-37. PubMed ID: 9843419
[TBL] [Abstract][Full Text] [Related]
19. Effects of the biological backbone on stacking interactions at DNA-protein interfaces: the interplay between the backbone···π and π···π components.
Churchill CD; Rutledge LR; Wetmore SD
Phys Chem Chem Phys; 2010 Nov; 12(43):14515-26. PubMed ID: 20927465
[TBL] [Abstract][Full Text] [Related]
20. Measurement of nucleobase pKa values in model mononucleotides shows RNA-RNA duplexes to be more stable than DNA-DNA duplexes.
Acharya P; Cheruku P; Chatterjee S; Acharya S; Chattopadhyaya J
J Am Chem Soc; 2004 Mar; 126(9):2862-9. PubMed ID: 14995203
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]