374 related articles for article (PubMed ID: 22275069)
1. Dynamics alignment: comparison of protein dynamics in the SCOP database.
Tobi D
Proteins; 2012 Apr; 80(4):1167-76. PubMed ID: 22275069
[TBL] [Abstract][Full Text] [Related]
2. Normalized global alignment for protein sequences.
Peris G; Marzal A
J Theor Biol; 2011 Dec; 291():22-8. PubMed ID: 21945336
[TBL] [Abstract][Full Text] [Related]
3. Protein structure mining using a structural alphabet.
Tyagi M; de Brevern AG; Srinivasan N; Offmann B
Proteins; 2008 May; 71(2):920-37. PubMed ID: 18004784
[TBL] [Abstract][Full Text] [Related]
4. Adaptive Smith-Waterman residue match seeding for protein structural alignment.
Topham CM; Rouquier M; Tarrat N; André I
Proteins; 2013 Oct; 81(10):1823-39. PubMed ID: 23720362
[TBL] [Abstract][Full Text] [Related]
5. Periodic distributions of hydrophobic amino acids allows the definition of fundamental building blocks to align distantly related proteins.
Baussand J; Deremble C; Carbone A
Proteins; 2007 May; 67(3):695-708. PubMed ID: 17299747
[TBL] [Abstract][Full Text] [Related]
6. An integrated approach to the analysis and modeling of protein sequences and structures. I. Protein structural alignment and a quantitative measure for protein structural distance.
Yang AS; Honig B
J Mol Biol; 2000 Aug; 301(3):665-78. PubMed ID: 10966776
[TBL] [Abstract][Full Text] [Related]
7. AutoSCOP: automated prediction of SCOP classifications using unique pattern-class mappings.
Gewehr JE; Hintermair V; Zimmer R
Bioinformatics; 2007 May; 23(10):1203-10. PubMed ID: 17379694
[TBL] [Abstract][Full Text] [Related]
8. A Shannon entropy-based filter detects high- quality profile-profile alignments in searches for remote homologues.
Capriotti E; Fariselli P; Rossi I; Casadio R
Proteins; 2004 Feb; 54(2):351-60. PubMed ID: 14696197
[TBL] [Abstract][Full Text] [Related]
9. FAST: a novel protein structure alignment algorithm.
Zhu J; Weng Z
Proteins; 2005 Feb; 58(3):618-27. PubMed ID: 15609341
[TBL] [Abstract][Full Text] [Related]
10. DIALIGN-T: an improved algorithm for segment-based multiple sequence alignment.
Subramanian AR; Weyer-Menkhoff J; Kaufmann M; Morgenstern B
BMC Bioinformatics; 2005 Mar; 6():66. PubMed ID: 15784139
[TBL] [Abstract][Full Text] [Related]
11. A generalized affine gap model significantly improves protein sequence alignment accuracy.
Zachariah MA; Crooks GE; Holbrook SR; Brenner SE
Proteins; 2005 Feb; 58(2):329-38. PubMed ID: 15562515
[TBL] [Abstract][Full Text] [Related]
12. NdPASA: a novel pairwise protein sequence alignment algorithm that incorporates neighbor-dependent amino acid propensities.
Wang J; Feng JA
Proteins; 2005 Feb; 58(3):628-37. PubMed ID: 15616964
[TBL] [Abstract][Full Text] [Related]
13. DOMAC: an accurate, hybrid protein domain prediction server.
Cheng J
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W354-6. PubMed ID: 17553833
[TBL] [Abstract][Full Text] [Related]
14. Consistency matrices: quantified structure alignments for sets of related proteins.
Van Walle I; Lasters I; Wyns L
Proteins; 2003 Apr; 51(1):1-9. PubMed ID: 12596259
[TBL] [Abstract][Full Text] [Related]
15. An integrated approach to the analysis and modeling of protein sequences and structures. III. A comparative study of sequence conservation in protein structural families using multiple structural alignments.
Yang AS; Honig B
J Mol Biol; 2000 Aug; 301(3):691-711. PubMed ID: 10966778
[TBL] [Abstract][Full Text] [Related]
16. QSCOP-BLAST--fast retrieval of quantified structural information for protein sequences of unknown structure.
Suhrer SJ; Gruber M; Sippl MJ
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W411-5. PubMed ID: 17478501
[TBL] [Abstract][Full Text] [Related]
17. MUSTANG: a multiple structural alignment algorithm.
Konagurthu AS; Whisstock JC; Stuckey PJ; Lesk AM
Proteins; 2006 Aug; 64(3):559-74. PubMed ID: 16736488
[TBL] [Abstract][Full Text] [Related]
18. FSSA: a novel method for identifying functional signatures from structural alignments.
Wang K; Samudrala R
Bioinformatics; 2005 Jul; 21(13):2969-77. PubMed ID: 15860561
[TBL] [Abstract][Full Text] [Related]
19. A comprehensive and non-redundant database of protein domain movements.
Qi G; Lee R; Hayward S
Bioinformatics; 2005 Jun; 21(12):2832-8. PubMed ID: 15802286
[TBL] [Abstract][Full Text] [Related]
20. Variable gap penalty for protein sequence-structure alignment.
Madhusudhan MS; Marti-Renom MA; Sanchez R; Sali A
Protein Eng Des Sel; 2006 Mar; 19(3):129-33. PubMed ID: 16423846
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]