137 related articles for article (PubMed ID: 22275120)
1. Conformational selection through electrostatics: Free energy simulations of GTP and GDP binding to archaeal initiation factor 2.
Satpati P; Simonson T
Proteins; 2012 May; 80(5):1264-82. PubMed ID: 22275120
[TBL] [Abstract][Full Text] [Related]
2. Nucleotide recognition by the initiation factor aIF5B: free energy simulations of a neoclassical GTPase.
Simonson T; Satpati P
Proteins; 2012 Dec; 80(12):2742-57. PubMed ID: 22887821
[TBL] [Abstract][Full Text] [Related]
3. Free energy simulations of a GTPase: GTP and GDP binding to archaeal initiation factor 2.
Satpati P; Clavaguéra C; Ohanessian G; Simonson T
J Phys Chem B; 2011 May; 115(20):6749-63. PubMed ID: 21534562
[TBL] [Abstract][Full Text] [Related]
4. Electrostatic free energies in translational GTPases: Classic allostery and the rest.
Simonson T; Aleksandrov A; Satpati P
Biochim Biophys Acta; 2015 May; 1850(5):1006-1016. PubMed ID: 25047891
[TBL] [Abstract][Full Text] [Related]
5. Conformational selection by the aIF2 GTPase: a molecular dynamics study of functional pathways.
Satpati P; Simonson T
Biochemistry; 2012 Jan; 51(1):353-61. PubMed ID: 22165972
[TBL] [Abstract][Full Text] [Related]
6. Structure of an archaeal heterotrimeric initiation factor 2 reveals a nucleotide state between the GTP and the GDP states.
Yatime L; Mechulam Y; Blanquet S; Schmitt E
Proc Natl Acad Sci U S A; 2007 Nov; 104(47):18445-50. PubMed ID: 18000047
[TBL] [Abstract][Full Text] [Related]
7. New insights into the interactions of the translation initiation factor 2 from archaea with guanine nucleotides and initiator tRNA.
Nikonov O; Stolboushkina E; Nikulin A; Hasenöhrl D; Bläsi U; Manstein DJ; Fedorov R; Garber M; Nikonov S
J Mol Biol; 2007 Oct; 373(2):328-36. PubMed ID: 17825838
[TBL] [Abstract][Full Text] [Related]
8. Conformational transitions in the γ subunit of the archaeal translation initiation factor 2.
Nikonov O; Stolboushkina E; Arkhipova V; Kravchenko O; Nikonov S; Garber M
Acta Crystallogr D Biol Crystallogr; 2014 Mar; 70(Pt 3):658-67. PubMed ID: 24598735
[TBL] [Abstract][Full Text] [Related]
9. Calculation of pathways for the conformational transition between the GTP- and GDP-bound states of the Ha-ras-p21 protein: calculations with explicit solvent simulations and comparison with calculations in vacuum.
Diaz JF; Wroblowski B; Schlitter J; Engelborghs Y
Proteins; 1997 Jul; 28(3):434-51. PubMed ID: 9223188
[TBL] [Abstract][Full Text] [Related]
10. Thermodynamics of GTP and GDP binding to bacterial initiation factor 2 suggests two types of structural transitions.
Hauryliuk V; Mitkevich VA; Draycheva A; Tankov S; Shyp V; Ermakov A; Kulikova AA; Makarov AA; Ehrenberg M
J Mol Biol; 2009 Dec; 394(4):621-6. PubMed ID: 19837086
[TBL] [Abstract][Full Text] [Related]
11. Thermodynamic analysis reveals that GTP binding affects the interaction between the alpha- and gamma-subunits of translation initiation factor 2.
Nakakido M; Tanaka Y; Sokabe M; Tsumoto K
Biochem Biophys Res Commun; 2008 Jul; 371(4):596-9. PubMed ID: 18381064
[TBL] [Abstract][Full Text] [Related]
12. Conformational transition of initiation factor 2 from the GTP- to GDP-bound state visualized on the ribosome.
Myasnikov AG; Marzi S; Simonetti A; Giuliodori AM; Gualerzi CO; Yusupova G; Yusupov M; Klaholz BP
Nat Struct Mol Biol; 2005 Dec; 12(12):1145-9. PubMed ID: 16284619
[TBL] [Abstract][Full Text] [Related]
13. Mechanism of the guanine nucleotide exchange reaction of Ras GTPase--evidence for a GTP/GDP displacement model.
Zhang B; Zhang Y; Shacter E; Zheng Y
Biochemistry; 2005 Feb; 44(7):2566-76. PubMed ID: 15709769
[TBL] [Abstract][Full Text] [Related]
14. Simulating GTP:Mg and GDP:Mg with a simple force field: a structural and thermodynamic analysis.
Simonson T; Satpati P
J Comput Chem; 2013 Apr; 34(10):836-46. PubMed ID: 23280996
[TBL] [Abstract][Full Text] [Related]
15. Thermodynamic characterization of ppGpp binding to EF-G or IF2 and of initiator tRNA binding to free IF2 in the presence of GDP, GTP, or ppGpp.
Mitkevich VA; Ermakov A; Kulikova AA; Tankov S; Shyp V; Soosaar A; Tenson T; Makarov AA; Ehrenberg M; Hauryliuk V
J Mol Biol; 2010 Oct; 402(5):838-46. PubMed ID: 20713063
[TBL] [Abstract][Full Text] [Related]
16. Influence of GTP/GDP and magnesium ion on the solvated structure of the protein FtsZ: a molecular dynamics study.
Jamous C; Basdevant N; Ha-Duong T
J Biomol Struct Dyn; 2014; 32(6):916-27. PubMed ID: 23782014
[TBL] [Abstract][Full Text] [Related]
17. Probing the conformational flexibility of monomeric FtsZ in GTP-bound, GDP-bound, and nucleotide-free states.
Natarajan K; Senapati S
Biochemistry; 2013 May; 52(20):3543-51. PubMed ID: 23617789
[TBL] [Abstract][Full Text] [Related]
18. Raman difference studies of GDP and GTP binding to c-Harvey ras.
Wang JH; Xiao DG; Deng H; Webb MR; Callender R
Biochemistry; 1998 Aug; 37(31):11106-16. PubMed ID: 9693007
[TBL] [Abstract][Full Text] [Related]
19. N-terminal hydrophobic residues of the G-protein ADP-ribosylation factor-1 insert into membrane phospholipids upon GDP to GTP exchange.
Antonny B; Beraud-Dufour S; Chardin P; Chabre M
Biochemistry; 1997 Apr; 36(15):4675-84. PubMed ID: 9109679
[TBL] [Abstract][Full Text] [Related]
20. What makes Ras an efficient molecular switch: a computational, biophysical, and structural study of Ras-GDP interactions with mutants of Raf.
Filchtinski D; Sharabi O; Rüppel A; Vetter IR; Herrmann C; Shifman JM
J Mol Biol; 2010 Jun; 399(3):422-35. PubMed ID: 20361980
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]