651 related articles for article (PubMed ID: 22291167)
1. Mining Arabidopsis thaliana RNA-seq data with Integrated Genome Browser reveals stress-induced alternative splicing of the putative splicing regulator SR45a.
Gulledge AA; Roberts AD; Vora H; Patel K; Loraine AE
Am J Bot; 2012 Feb; 99(2):219-31. PubMed ID: 22291167
[TBL] [Abstract][Full Text] [Related]
2. A protocol for visual analysis of alternative splicing in RNA-Seq data using integrated genome browser.
Gulledge AA; Vora H; Patel K; Loraine AE
Methods Mol Biol; 2014; 1158():123-37. PubMed ID: 24792048
[TBL] [Abstract][Full Text] [Related]
3. An 'eFP-Seq Browser' for visualizing and exploring RNA sequencing data.
Sullivan A; Purohit PK; Freese NH; Pasha A; Esteban E; Waese J; Wu A; Chen M; Chin CY; Song R; Watharkar SR; Chan AP; Krishnakumar V; Vaughn MW; Town C; Loraine AE; Provart NJ
Plant J; 2019 Nov; 100(3):641-654. PubMed ID: 31350781
[TBL] [Abstract][Full Text] [Related]
4. Genome-wide mapping of alternative splicing in Arabidopsis thaliana.
Filichkin SA; Priest HD; Givan SA; Shen R; Bryant DW; Fox SE; Wong WK; Mockler TC
Genome Res; 2010 Jan; 20(1):45-58. PubMed ID: 19858364
[TBL] [Abstract][Full Text] [Related]
5. RNA-seq of Arabidopsis pollen uncovers novel transcription and alternative splicing.
Loraine AE; McCormick S; Estrada A; Patel K; Qin P
Plant Physiol; 2013 Jun; 162(2):1092-109. PubMed ID: 23590974
[TBL] [Abstract][Full Text] [Related]
6. Dual roles of the serine/arginine-rich splicing factor SR45a in promoting and interacting with nuclear cap-binding complex to modulate the salt-stress response in Arabidopsis.
Li Y; Guo Q; Liu P; Huang J; Zhang S; Yang G; Wu C; Zheng C; Yan K
New Phytol; 2021 Apr; 230(2):641-655. PubMed ID: 33421141
[TBL] [Abstract][Full Text] [Related]
7. Identification of alternative splicing events regulated by an Arabidopsis serine/arginine-like protein, atSR45a, in response to high-light stress using a tiling array.
Yoshimura K; Mori T; Yokoyama K; Koike Y; Tanabe N; Sato N; Takahashi H; Maruta T; Shigeoka S
Plant Cell Physiol; 2011 Oct; 52(10):1786-805. PubMed ID: 21862516
[TBL] [Abstract][Full Text] [Related]
8. Unproductive alternative splicing and nonsense mRNAs: a widespread phenomenon among plant circadian clock genes.
Filichkin SA; Mockler TC
Biol Direct; 2012 Jul; 7():20. PubMed ID: 22747664
[TBL] [Abstract][Full Text] [Related]
9. A Genetic Screen for Pre-mRNA Splicing Mutants of
Kanno T; Lin WD; Fu JL; Chang CL; Matzke AJM; Matzke M
Genetics; 2017 Dec; 207(4):1347-1359. PubMed ID: 28971960
[TBL] [Abstract][Full Text] [Related]
10. Read-Split-Run: an improved bioinformatics pipeline for identification of genome-wide non-canonical spliced regions using RNA-Seq data.
Bai Y; Kinne J; Donham B; Jiang F; Ding L; Hassler JR; Kaufman RJ
BMC Genomics; 2016 Aug; 17 Suppl 7(Suppl 7):503. PubMed ID: 27556805
[TBL] [Abstract][Full Text] [Related]
11. Genome-wide analysis of alternative splicing of pre-mRNA under salt stress in Arabidopsis.
Ding F; Cui P; Wang Z; Zhang S; Ali S; Xiong L
BMC Genomics; 2014 Jun; 15(1):431. PubMed ID: 24897929
[TBL] [Abstract][Full Text] [Related]
12. Alternative Splicing Signatures in RNA-seq Data: Percent Spliced in (PSI).
Schafer S; Miao K; Benson CC; Heinig M; Cook SA; Hubner N
Curr Protoc Hum Genet; 2015 Oct; 87():11.16.1-11.16.14. PubMed ID: 26439713
[TBL] [Abstract][Full Text] [Related]
13. Human splicing diversity and the extent of unannotated splice junctions across human RNA-seq samples on the Sequence Read Archive.
Nellore A; Jaffe AE; Fortin JP; Alquicira-Hernández J; Collado-Torres L; Wang S; Phillips RA; Karbhari N; Hansen KD; Langmead B; Leek JT
Genome Biol; 2016 Dec; 17(1):266. PubMed ID: 28038678
[TBL] [Abstract][Full Text] [Related]
14. Alternative splicing of mini-exons in the Arabidopsis leaf rust receptor-like kinase LRK10 genes affects subcellular localisation.
Shin KH; Yang SH; Lee JY; Lim CW; Lee SC; Brown JW; Kim SH
Plant Cell Rep; 2015 Mar; 34(3):495-505. PubMed ID: 25510357
[TBL] [Abstract][Full Text] [Related]
15. Computational analysis reveals a correlation of exon-skipping events with splicing, transcription and epigenetic factors.
Ye Z; Chen Z; Lan X; Hara S; Sunkel B; Huang TH; Elnitski L; Wang Q; Jin VX
Nucleic Acids Res; 2014 Mar; 42(5):2856-69. PubMed ID: 24369421
[TBL] [Abstract][Full Text] [Related]
16. Transcriptome and genome conservation of alternative splicing events in humans and mice.
Sugnet CW; Kent WJ; Ares M; Haussler D
Pac Symp Biocomput; 2004; ():66-77. PubMed ID: 14992493
[TBL] [Abstract][Full Text] [Related]
17. Alternative splicing at NAGNAG acceptors in Arabidopsis thaliana SR and SR-related protein-coding genes.
Schindler S; Szafranski K; Hiller M; Ali GS; Palusa SG; Backofen R; Platzer M; Reddy AS
BMC Genomics; 2008 Apr; 9():159. PubMed ID: 18402682
[TBL] [Abstract][Full Text] [Related]
18. Multiplexed primer extension sequencing: A targeted RNA-seq method that enables high-precision quantitation of mRNA splicing isoforms and rare pre-mRNA splicing intermediates.
Gildea MA; Dwyer ZW; Pleiss JA
Methods; 2020 Apr; 176():34-45. PubMed ID: 31121301
[TBL] [Abstract][Full Text] [Related]
19. AtRTD - a comprehensive reference transcript dataset resource for accurate quantification of transcript-specific expression in Arabidopsis thaliana.
Zhang R; Calixto CP; Tzioutziou NA; James AB; Simpson CG; Guo W; Marquez Y; Kalyna M; Patro R; Eyras E; Barta A; Nimmo HG; Brown JW
New Phytol; 2015 Oct; 208(1):96-101. PubMed ID: 26111100
[TBL] [Abstract][Full Text] [Related]
20. SplicingTypesAnno: annotating and quantifying alternative splicing events for RNA-Seq data.
Sun X; Zuo F; Ru Y; Guo J; Yan X; Sablok G
Comput Methods Programs Biomed; 2015 Apr; 119(1):53-62. PubMed ID: 25720307
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
