608 related articles for article (PubMed ID: 22332237)
1. Phylogenomic analysis of bacterial and archaeal sequences with AMPHORA2.
Wu M; Scott AJ
Bioinformatics; 2012 Apr; 28(7):1033-4. PubMed ID: 22332237
[TBL] [Abstract][Full Text] [Related]
2. A large-scale evaluation of algorithms to calculate average nucleotide identity.
Yoon SH; Ha SM; Lim J; Kwon S; Chun J
Antonie Van Leeuwenhoek; 2017 Oct; 110(10):1281-1286. PubMed ID: 28204908
[TBL] [Abstract][Full Text] [Related]
3. Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life.
Parks DH; Rinke C; Chuvochina M; Chaumeil PA; Woodcroft BJ; Evans PN; Hugenholtz P; Tyson GW
Nat Microbiol; 2017 Nov; 2(11):1533-1542. PubMed ID: 28894102
[TBL] [Abstract][Full Text] [Related]
4. A phylum-level bacterial phylogenetic marker database.
Wang Z; Wu M
Mol Biol Evol; 2013 Jun; 30(6):1258-62. PubMed ID: 23519313
[TBL] [Abstract][Full Text] [Related]
5. The BISMiS 2011 special issue on prokaryotic systematics, a vital discipline entering a period of transition.
Sutcliffe IC; Trujillo ME; Goodfellow M
Antonie Van Leeuwenhoek; 2012 Jan; 101(1):1-2. PubMed ID: 22080412
[No Abstract] [Full Text] [Related]
6. UBCG: Up-to-date bacterial core gene set and pipeline for phylogenomic tree reconstruction.
Na SI; Kim YO; Yoon SH; Ha SM; Baek I; Chun J
J Microbiol; 2018 Apr; 56(4):280-285. PubMed ID: 29492869
[TBL] [Abstract][Full Text] [Related]
7. Phylogenetic characterization of a biogas plant microbial community integrating clone library 16S-rDNA sequences and metagenome sequence data obtained by 454-pyrosequencing.
Kröber M; Bekel T; Diaz NN; Goesmann A; Jaenicke S; Krause L; Miller D; Runte KJ; Viehöver P; Pühler A; Schlüter A
J Biotechnol; 2009 Jun; 142(1):38-49. PubMed ID: 19480946
[TBL] [Abstract][Full Text] [Related]
8. Large-scale k-mer-based analysis of the informational properties of genomes, comparative genomics and taxonomy.
Bussi Y; Kapon R; Reich Z
PLoS One; 2021; 16(10):e0258693. PubMed ID: 34648558
[TBL] [Abstract][Full Text] [Related]
9. Inferring Phylogenomic Relationship of Microbes Using Scalable Alignment-Free Methods.
Bernard G; Stephens TG; González-Pech RA; Chan CX
Methods Mol Biol; 2021; 2242():69-76. PubMed ID: 33961218
[TBL] [Abstract][Full Text] [Related]
10. ISEScan: automated identification of insertion sequence elements in prokaryotic genomes.
Xie Z; Tang H
Bioinformatics; 2017 Nov; 33(21):3340-3347. PubMed ID: 29077810
[TBL] [Abstract][Full Text] [Related]
11. Comparative Genomics for Prokaryotes.
Setubal JC; Almeida NF; Wattam AR
Methods Mol Biol; 2018; 1704():55-78. PubMed ID: 29277863
[TBL] [Abstract][Full Text] [Related]
12. A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea.
Wu D; Hugenholtz P; Mavromatis K; Pukall R; Dalin E; Ivanova NN; Kunin V; Goodwin L; Wu M; Tindall BJ; Hooper SD; Pati A; Lykidis A; Spring S; Anderson IJ; D'haeseleer P; Zemla A; Singer M; Lapidus A; Nolan M; Copeland A; Han C; Chen F; Cheng JF; Lucas S; Kerfeld C; Lang E; Gronow S; Chain P; Bruce D; Rubin EM; Kyrpides NC; Klenk HP; Eisen JA
Nature; 2009 Dec; 462(7276):1056-60. PubMed ID: 20033048
[TBL] [Abstract][Full Text] [Related]
13. En route to a genome-based classification of Archaea and Bacteria?
Klenk HP; Göker M
Syst Appl Microbiol; 2010 Jun; 33(4):175-82. PubMed ID: 20409658
[TBL] [Abstract][Full Text] [Related]
14. An emerging phylogenetic core of Archaea: phylogenies of transcription and translation machineries converge following addition of new genome sequences.
Brochier C; Forterre P; Gribaldo S
BMC Evol Biol; 2005 Jun; 5():36. PubMed ID: 15932645
[TBL] [Abstract][Full Text] [Related]
15. Improved genomic island predictions with IslandPath-DIMOB.
Bertelli C; Brinkman FSL
Bioinformatics; 2018 Jul; 34(13):2161-2167. PubMed ID: 29905770
[TBL] [Abstract][Full Text] [Related]
16. ARGs-OAP v2.0 with an expanded SARG database and Hidden Markov Models for enhancement characterization and quantification of antibiotic resistance genes in environmental metagenomes.
Yin X; Jiang XT; Chai B; Li L; Yang Y; Cole JR; Tiedje JM; Zhang T
Bioinformatics; 2018 Jul; 34(13):2263-2270. PubMed ID: 29408954
[TBL] [Abstract][Full Text] [Related]
17. Microbial taxonomy in the era of OMICS: application of DNA sequences, computational tools and techniques.
Mahato NK; Gupta V; Singh P; Kumari R; Verma H; Tripathi C; Rani P; Sharma A; Singhvi N; Sood U; Hira P; Kohli P; Nayyar N; Puri A; Bajaj A; Kumar R; Negi V; Talwar C; Khurana H; Nagar S; Sharma M; Mishra H; Singh AK; Dhingra G; Negi RK; Shakarad M; Singh Y; Lal R
Antonie Van Leeuwenhoek; 2017 Oct; 110(10):1357-1371. PubMed ID: 28831610
[TBL] [Abstract][Full Text] [Related]
18. The All-Species Living Tree project: a 16S rRNA-based phylogenetic tree of all sequenced type strains.
Yarza P; Richter M; Peplies J; Euzeby J; Amann R; Schleifer KH; Ludwig W; Glöckner FO; Rosselló-Móra R
Syst Appl Microbiol; 2008 Sep; 31(4):241-50. PubMed ID: 18692976
[TBL] [Abstract][Full Text] [Related]
19. Phylogeny Reconstruction with Alignment-Free Method That Corrects for Horizontal Gene Transfer.
Bromberg R; Grishin NV; Otwinowski Z
PLoS Comput Biol; 2016 Jun; 12(6):e1004985. PubMed ID: 27336403
[TBL] [Abstract][Full Text] [Related]
20. IonGAP: integrative bacterial genome analysis for Ion Torrent sequence data.
Baez-Ortega A; Lorenzo-Diaz F; Hernandez M; Gonzalez-Vila CI; Roda-Garcia JL; Colebrook M; Flores C
Bioinformatics; 2015 Sep; 31(17):2870-3. PubMed ID: 25953799
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]