These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
176 related articles for article (PubMed ID: 22348074)
21. InterEvDock: a docking server to predict the structure of protein-protein interactions using evolutionary information. Yu J; Vavrusa M; Andreani J; Rey J; Tufféry P; Guerois R Nucleic Acids Res; 2016 Jul; 44(W1):W542-9. PubMed ID: 27131368 [TBL] [Abstract][Full Text] [Related]
22. Simulated unbound structures for benchmarking of protein docking in the DOCKGROUND resource. Kirys T; Ruvinsky AM; Singla D; Tuzikov AV; Kundrotas PJ; Vakser IA BMC Bioinformatics; 2015 Jul; 16(1):243. PubMed ID: 26227548 [TBL] [Abstract][Full Text] [Related]
23. Cross-over between discrete and continuous protein structure space: insights into automatic classification and networks of protein structures. Pascual-García A; Abia D; Ortiz AR; Bastolla U PLoS Comput Biol; 2009 Mar; 5(3):e1000331. PubMed ID: 19325884 [TBL] [Abstract][Full Text] [Related]
24. Toward high-throughput, multicriteria protein-structure comparison and analysis. Shah AA; Folino G; Krasnogor N IEEE Trans Nanobioscience; 2010 Jun; 9(2):144-55. PubMed ID: 20650704 [TBL] [Abstract][Full Text] [Related]
28. PIBASE: a comprehensive database of structurally defined protein interfaces. Davis FP; Sali A Bioinformatics; 2005 May; 21(9):1901-7. PubMed ID: 15657096 [TBL] [Abstract][Full Text] [Related]
29. Structural templates for comparative protein docking. Anishchenko I; Kundrotas PJ; Tuzikov AV; Vakser IA Proteins; 2015 Sep; 83(9):1563-70. PubMed ID: 25488330 [TBL] [Abstract][Full Text] [Related]
30. InterEvDock2: an expanded server for protein docking using evolutionary and biological information from homology models and multimeric inputs. Quignot C; Rey J; Yu J; Tufféry P; Guerois R; Andreani J Nucleic Acids Res; 2018 Jul; 46(W1):W408-W416. PubMed ID: 29741647 [TBL] [Abstract][Full Text] [Related]
32. Nonlinear scoring functions for similarity-based ligand docking and binding affinity prediction. Brylinski M J Chem Inf Model; 2013 Nov; 53(11):3097-112. PubMed ID: 24171431 [TBL] [Abstract][Full Text] [Related]
33. Structure-dependent sequence alignment for remotely related proteins. Yang AS Bioinformatics; 2002 Dec; 18(12):1658-65. PubMed ID: 12490451 [TBL] [Abstract][Full Text] [Related]
34. An Integrated Approach to Sequence-Independent Local Alignment of Protein Binding Sites. Pang B; Schlessman D; Kuang X; Zhao N; Shyu D; Korkin D; Shyu CR IEEE/ACM Trans Comput Biol Bioinform; 2015; 12(2):298-308. PubMed ID: 26357218 [TBL] [Abstract][Full Text] [Related]
35. A comprehensive system for evaluation of remote sequence similarity detection. Qi Y; Sadreyev RI; Wang Y; Kim BH; Grishin NV BMC Bioinformatics; 2007 Aug; 8():314. PubMed ID: 17725841 [TBL] [Abstract][Full Text] [Related]
36. Modeling CAPRI targets 110-120 by template-based and free docking using contact potential and combined scoring function. Kundrotas PJ; Anishchenko I; Badal VD; Das M; Dauzhenka T; Vakser IA Proteins; 2018 Mar; 86 Suppl 1(Suppl 1):302-310. PubMed ID: 28905425 [TBL] [Abstract][Full Text] [Related]
37. Classification of protein complexes based on docking difficulty. Vajda S Proteins; 2005 Aug; 60(2):176-80. PubMed ID: 15981248 [TBL] [Abstract][Full Text] [Related]
38. BindML/BindML+: Detecting Protein-Protein Interaction Interface Propensity from Amino Acid Substitution Patterns. Wei Q; La D; Kihara D Methods Mol Biol; 2017; 1529():279-289. PubMed ID: 27914057 [TBL] [Abstract][Full Text] [Related]
39. Docking of protein models. Tovchigrechko A; Wells CA; Vakser IA Protein Sci; 2002 Aug; 11(8):1888-96. PubMed ID: 12142443 [TBL] [Abstract][Full Text] [Related]
40. Docking proteins and peptides under evolutionary constraints in Critical Assessment of PRediction of Interactions rounds 38 to 45. Nadaradjane AA; Quignot C; Traoré S; Andreani J; Guerois R Proteins; 2020 Aug; 88(8):986-998. PubMed ID: 31746034 [TBL] [Abstract][Full Text] [Related] [Previous] [Next] [New Search]