These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

176 related articles for article (PubMed ID: 22348074)

  • 41. Refinement of protein cores and protein-peptide interfaces using a potential scaling approach.
    Riemann RN; Zacharias M
    Protein Eng Des Sel; 2005 Oct; 18(10):465-76. PubMed ID: 16155119
    [TBL] [Abstract][Full Text] [Related]  

  • 42. Systematic analysis of the effect of multiple templates on the accuracy of comparative models of protein structure.
    Chakravarty S; Godbole S; Zhang B; Berger S; Sanchez R
    BMC Struct Biol; 2008 Jul; 8():31. PubMed ID: 18631402
    [TBL] [Abstract][Full Text] [Related]  

  • 43. Visual Analysis of Protein-Protein Interaction Docking Models Using COZOID Tool.
    Byska J; Jurcik A; Furmanova K; Kozlikova B; Palecek JJ
    Methods Mol Biol; 2020; 2074():81-94. PubMed ID: 31583632
    [TBL] [Abstract][Full Text] [Related]  

  • 44. Defining the limits of homology modeling in information-driven protein docking.
    Rodrigues JP; Melquiond AS; Karaca E; Trellet M; van Dijk M; van Zundert GC; Schmitz C; de Vries SJ; Bordogna A; Bonati L; Kastritis PL; Bonvin AM
    Proteins; 2013 Dec; 81(12):2119-28. PubMed ID: 23913867
    [TBL] [Abstract][Full Text] [Related]  

  • 45. Templates are available to model nearly all complexes of structurally characterized proteins.
    Kundrotas PJ; Zhu Z; Janin J; Vakser IA
    Proc Natl Acad Sci U S A; 2012 Jun; 109(24):9438-41. PubMed ID: 22645367
    [TBL] [Abstract][Full Text] [Related]  

  • 46. Improved scoring function for comparative modeling using the M4T method.
    Rykunov D; Steinberger E; Madrid-Aliste CJ; Fiser A
    J Struct Funct Genomics; 2009 Mar; 10(1):95-9. PubMed ID: 18985440
    [TBL] [Abstract][Full Text] [Related]  

  • 47. Protein docking using case-based reasoning.
    Ghoorah AW; Devignes MD; Smaïl-Tabbone M; Ritchie DW
    Proteins; 2013 Dec; 81(12):2150-8. PubMed ID: 24123156
    [TBL] [Abstract][Full Text] [Related]  

  • 48. Structural motifs in protein cores and at protein-protein interfaces are different.
    Hadarovich A; Chakravarty D; Tuzikov AV; Ben-Tal N; Kundrotas PJ; Vakser IA
    Protein Sci; 2021 Feb; 30(2):381-390. PubMed ID: 33166001
    [TBL] [Abstract][Full Text] [Related]  

  • 49. CLUB-MARTINI: Selecting Favourable Interactions amongst Available Candidates, a Coarse-Grained Simulation Approach to Scoring Docking Decoys.
    Hou Q; Lensink MF; Heringa J; Feenstra KA
    PLoS One; 2016; 11(5):e0155251. PubMed ID: 27166787
    [TBL] [Abstract][Full Text] [Related]  

  • 50. dockYard--a repository to assist modeling of protein-protein docking.
    Mitra P; Pal D
    J Mol Model; 2011 Mar; 17(3):599-606. PubMed ID: 20524020
    [TBL] [Abstract][Full Text] [Related]  

  • 51. Improving CAPRI predictions: optimized desolvation for rigid-body docking.
    Fernández-Recio J; Abagyan R; Totrov M
    Proteins; 2005 Aug; 60(2):308-13. PubMed ID: 15981266
    [TBL] [Abstract][Full Text] [Related]  

  • 52. Energy-based graph convolutional networks for scoring protein docking models.
    Cao Y; Shen Y
    Proteins; 2020 Aug; 88(8):1091-1099. PubMed ID: 32144844
    [TBL] [Abstract][Full Text] [Related]  

  • 53. What method to use for protein-protein docking?
    Porter KA; Desta I; Kozakov D; Vajda S
    Curr Opin Struct Biol; 2019 Apr; 55():1-7. PubMed ID: 30711743
    [TBL] [Abstract][Full Text] [Related]  

  • 54. Enriching the human apoptosis pathway by predicting the structures of protein-protein complexes.
    Acuner Ozbabacan SE; Keskin O; Nussinov R; Gursoy A
    J Struct Biol; 2012 Sep; 179(3):338-46. PubMed ID: 22349545
    [TBL] [Abstract][Full Text] [Related]  

  • 55. On the accuracy of homology modeling and sequence alignment methods applied to membrane proteins.
    Forrest LR; Tang CL; Honig B
    Biophys J; 2006 Jul; 91(2):508-17. PubMed ID: 16648166
    [TBL] [Abstract][Full Text] [Related]  

  • 56. Template-Based Prediction of Protein-Peptide Interactions by Using GalaxyPepDock.
    Lee H; Seok C
    Methods Mol Biol; 2017; 1561():37-47. PubMed ID: 28236232
    [TBL] [Abstract][Full Text] [Related]  

  • 57. Knowledge-guided docking: accurate prospective prediction of bound configurations of novel ligands using Surflex-Dock.
    Cleves AE; Jain AN
    J Comput Aided Mol Des; 2015 Jun; 29(6):485-509. PubMed ID: 25940276
    [TBL] [Abstract][Full Text] [Related]  

  • 58. Spatial clustering of protein binding sites for template based protein docking.
    Ghoorah AW; Devignes MD; Smaïl-Tabbone M; Ritchie DW
    Bioinformatics; 2011 Oct; 27(20):2820-7. PubMed ID: 21873637
    [TBL] [Abstract][Full Text] [Related]  

  • 59. Optimal contact map alignment of protein-protein interfaces.
    Pulim V; Berger B; Bienkowska J
    Bioinformatics; 2008 Oct; 24(20):2324-8. PubMed ID: 18710876
    [TBL] [Abstract][Full Text] [Related]  

  • 60. Towards the prediction of protein interaction partners using physical docking.
    Wass MN; Fuentes G; Pons C; Pazos F; Valencia A
    Mol Syst Biol; 2011 Feb; 7():469. PubMed ID: 21326236
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 9.