BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

199 related articles for article (PubMed ID: 22363513)

  • 1. Efficient exact maximum a posteriori computation for bayesian SNP genotyping in polyploids.
    Serang O; Mollinari M; Garcia AA
    PLoS One; 2012; 7(2):e30906. PubMed ID: 22363513
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Quantitative SNP genotyping of polyploids with MassARRAY and other platforms.
    Mollinari M; Serang O
    Methods Mol Biol; 2015; 1245():215-41. PubMed ID: 25373761
    [TBL] [Abstract][Full Text] [Related]  

  • 3. A fully automated pipeline for quantitative genotype calling from next generation sequencing data in autopolyploids.
    Pereira GS; Garcia AAF; Margarido GRA
    BMC Bioinformatics; 2018 Nov; 19(1):398. PubMed ID: 30382832
    [TBL] [Abstract][Full Text] [Related]  

  • 4. UGbS-Flex, a novel bioinformatics pipeline for imputation-free SNP discovery in polyploids without a reference genome: finger millet as a case study.
    Qi P; Gimode D; Saha D; Schröder S; Chakraborty D; Wang X; Dida MM; Malmberg RL; Devos KM
    BMC Plant Biol; 2018 Jun; 18(1):117. PubMed ID: 29902967
    [TBL] [Abstract][Full Text] [Related]  

  • 5. flopp: Extremely Fast Long-Read Polyploid Haplotype Phasing by Uniform Tree Partitioning.
    Shaw J; Yu YW
    J Comput Biol; 2022 Feb; 29(2):195-211. PubMed ID: 35041529
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Role of NGS and SNP genotyping methods in sugarcane improvement programs.
    Manimekalai R; Suresh G; Govinda Kurup H; Athiappan S; Kandalam M
    Crit Rev Biotechnol; 2020 Sep; 40(6):865-880. PubMed ID: 32508157
    [TBL] [Abstract][Full Text] [Related]  

  • 7. SNP genotyping allows an in-depth characterisation of the genome of sugarcane and other complex autopolyploids.
    Garcia AA; Mollinari M; Marconi TG; Serang OR; Silva RR; Vieira ML; Vicentini R; Costa EA; Mancini MC; Garcia MO; Pastina MM; Gazaffi R; Martins ER; Dahmer N; Sforça DA; Silva CB; Bundock P; Henry RJ; Souza GM; van Sluys MA; Landell MG; Carneiro MS; Vincentz MA; Pinto LR; Vencovsky R; Souza AP
    Sci Rep; 2013 Dec; 3():3399. PubMed ID: 24292365
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Mining sequence variations in representative polyploid sugarcane germplasm accessions.
    Yang X; Song J; You Q; Paudel DR; Zhang J; Wang J
    BMC Genomics; 2017 Aug; 18(1):594. PubMed ID: 28793856
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Haplotype inference from unphased SNP data in heterozygous polyploids based on SAT.
    Neigenfind J; Gyetvai G; Basekow R; Diehl S; Achenbach U; Gebhardt C; Selbig J; Kersten B
    BMC Genomics; 2008 Jul; 9():356. PubMed ID: 18667059
    [TBL] [Abstract][Full Text] [Related]  

  • 10. pSBVB: A Versatile Simulation Tool To Evaluate Genomic Selection in Polyploid Species.
    Zingaretti ML; Monfort A; Pérez-Enciso M
    G3 (Bethesda); 2019 Feb; 9(2):327-334. PubMed ID: 30573468
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Using probabilistic genotypes in linkage analysis of polyploids.
    Liao Y; Voorrips RE; Bourke PM; Tumino G; Arens P; Visser RGF; Smulders MJM; Maliepaard C
    Theor Appl Genet; 2021 Aug; 134(8):2443-2457. PubMed ID: 34032878
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Genotyping Polyploids from Messy Sequencing Data.
    Gerard D; Ferrão LFV; Garcia AAF; Stephens M
    Genetics; 2018 Nov; 210(3):789-807. PubMed ID: 30185430
    [TBL] [Abstract][Full Text] [Related]  

  • 13. polyRAD: Genotype Calling with Uncertainty from Sequencing Data in Polyploids and Diploids.
    Clark LV; Lipka AE; Sacks EJ
    G3 (Bethesda); 2019 Mar; 9(3):663-673. PubMed ID: 30655271
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Haplotag: Software for Haplotype-Based Genotyping-by-Sequencing Analysis.
    Tinker NA; Bekele WA; Hattori J
    G3 (Bethesda); 2016 Apr; 6(4):857-63. PubMed ID: 26818073
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Assembly of whole-chromosome pseudomolecules for polyploid plant genomes using outbred mapping populations.
    Zhou C; Olukolu B; Gemenet DC; Wu S; Gruneberg W; Cao MD; Fei Z; Zeng ZB; George AW; Khan A; Yencho GC; Coin LJM
    Nat Genet; 2020 Nov; 52(11):1256-1264. PubMed ID: 33128049
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Genotyping single nucleotide polymorphisms and inferring ploidy by amplicon sequencing for polyploid, ploidy-variable organisms.
    Delomas TA; Willis SC; Parker BL; Miller D; Anders P; Schreier A; Narum S
    Mol Ecol Resour; 2021 Oct; 21(7):2288-2298. PubMed ID: 34008918
    [TBL] [Abstract][Full Text] [Related]  

  • 17. SNP genotyping and parameter estimation in polyploids using low-coverage sequencing data.
    Blischak PD; Kubatko LS; Wolfe AD
    Bioinformatics; 2018 Feb; 34(3):407-415. PubMed ID: 29028881
    [TBL] [Abstract][Full Text] [Related]  

  • 18. SHEsisPlus, a toolset for genetic studies on polyploid species.
    Shen J; Li Z; Chen J; Song Z; Zhou Z; Shi Y
    Sci Rep; 2016 Apr; 6():24095. PubMed ID: 27048905
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Single nucleotide polymorphism genotyping in polyploid wheat with the Illumina GoldenGate assay.
    Akhunov E; Nicolet C; Dvorak J
    Theor Appl Genet; 2009 Aug; 119(3):507-17. PubMed ID: 19449174
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Priors for genotyping polyploids.
    Gerard D; Ferrão LFV
    Bioinformatics; 2020 Mar; 36(6):1795-1800. PubMed ID: 32176767
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.