These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
286 related articles for article (PubMed ID: 22375074)
1. The mzIdentML data standard for mass spectrometry-based proteomics results. Jones AR; Eisenacher M; Mayer G; Kohlbacher O; Siepen J; Hubbard SJ; Selley JN; Searle BC; Shofstahl J; Seymour SL; Julian R; Binz PA; Deutsch EW; Hermjakob H; Reisinger F; Griss J; Vizcaíno JA; Chambers M; Pizarro A; Creasy D Mol Cell Proteomics; 2012 Jul; 11(7):M111.014381. PubMed ID: 22375074 [TBL] [Abstract][Full Text] [Related]
2. A standardized framing for reporting protein identifications in mzIdentML 1.2. Seymour SL; Farrah T; Binz PA; Chalkley RJ; Cottrell JS; Searle BC; Tabb DL; Vizcaíno JA; Prieto G; Uszkoreit J; Eisenacher M; Martínez-Bartolomé S; Ghali F; Jones AR Proteomics; 2014 Nov; 14(21-22):2389-99. PubMed ID: 25092112 [TBL] [Abstract][Full Text] [Related]
3. The mzQuantML data standard for mass spectrometry-based quantitative studies in proteomics. Walzer M; Qi D; Mayer G; Uszkoreit J; Eisenacher M; Sachsenberg T; Gonzalez-Galarza FF; Fan J; Bessant C; Deutsch EW; Reisinger F; Vizcaíno JA; Medina-Aunon JA; Albar JP; Kohlbacher O; Jones AR Mol Cell Proteomics; 2013 Aug; 12(8):2332-40. PubMed ID: 23599424 [TBL] [Abstract][Full Text] [Related]
4. mzIdentML: an open community-built standard format for the results of proteomics spectrum identification algorithms. Eisenacher M Methods Mol Biol; 2011; 696():161-77. PubMed ID: 21063947 [TBL] [Abstract][Full Text] [Related]
5. jmzReader: A Java parser library to process and visualize multiple text and XML-based mass spectrometry data formats. Griss J; Reisinger F; Hermjakob H; Vizcaíno JA Proteomics; 2012 Mar; 12(6):795-8. PubMed ID: 22539430 [TBL] [Abstract][Full Text] [Related]
6. The mzIdentML Data Standard Version 1.2, Supporting Advances in Proteome Informatics. Vizcaíno JA; Mayer G; Perkins S; Barsnes H; Vaudel M; Perez-Riverol Y; Ternent T; Uszkoreit J; Eisenacher M; Fischer L; Rappsilber J; Netz E; Walzer M; Kohlbacher O; Leitner A; Chalkley RJ; Ghali F; Martínez-Bartolomé S; Deutsch EW; Jones AR Mol Cell Proteomics; 2017 Jul; 16(7):1275-1285. PubMed ID: 28515314 [TBL] [Abstract][Full Text] [Related]
7. Mass spectrometer output file format mzML. Deutsch EW Methods Mol Biol; 2010; 604():319-31. PubMed ID: 20013381 [TBL] [Abstract][Full Text] [Related]
8. Proteomics data exchange and storage: the need for common standards and public repositories. Jiménez RC; Vizcaíno JA Methods Mol Biol; 2013; 1007():317-33. PubMed ID: 23666733 [TBL] [Abstract][Full Text] [Related]
9. Tools (Viewer, Library and Validator) that facilitate use of the peptide and protein identification standard format, termed mzIdentML. Ghali F; Krishna R; Lukasse P; Martínez-Bartolomé S; Reisinger F; Hermjakob H; Vizcaíno JA; Jones AR Mol Cell Proteomics; 2013 Nov; 12(11):3026-35. PubMed ID: 23813117 [TBL] [Abstract][Full Text] [Related]
10. PRIDE Inspector Toolsuite: Moving Toward a Universal Visualization Tool for Proteomics Data Standard Formats and Quality Assessment of ProteomeXchange Datasets. Perez-Riverol Y; Xu QW; Wang R; Uszkoreit J; Griss J; Sanchez A; Reisinger F; Csordas A; Ternent T; Del-Toro N; Dianes JA; Eisenacher M; Hermjakob H; Vizcaíno JA Mol Cell Proteomics; 2016 Jan; 15(1):305-17. PubMed ID: 26545397 [TBL] [Abstract][Full Text] [Related]
11. Spectra, chromatograms, Metadata: mzML-the standard data format for mass spectrometer output. Turewicz M; Deutsch EW Methods Mol Biol; 2011; 696():179-203. PubMed ID: 21063948 [TBL] [Abstract][Full Text] [Related]
12. The HUPO proteomics standards initiative--easing communication and minimizing data loss in a changing world. Orchard S; Hermjakob H Brief Bioinform; 2008 Mar; 9(2):166-73. PubMed ID: 18065433 [TBL] [Abstract][Full Text] [Related]
13. Toward a Sample Metadata Standard in Public Proteomics Repositories. Perez-Riverol Y; J Proteome Res; 2020 Oct; 19(10):3906-3909. PubMed ID: 32786688 [TBL] [Abstract][Full Text] [Related]
14. ms-data-core-api: an open-source, metadata-oriented library for computational proteomics. Perez-Riverol Y; Uszkoreit J; Sanchez A; Ternent T; Del Toro N; Hermjakob H; Vizcaíno JA; Wang R Bioinformatics; 2015 Sep; 31(17):2903-5. PubMed ID: 25910694 [TBL] [Abstract][Full Text] [Related]