These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

198 related articles for article (PubMed ID: 22383870)

  • 1. Robust detection of hierarchical communities from Escherichia coli gene expression data.
    Treviño S; Sun Y; Cooper TF; Bassler KE
    PLoS Comput Biol; 2012; 8(2):e1002391. PubMed ID: 22383870
    [TBL] [Abstract][Full Text] [Related]  

  • 2. The condition-dependent transcriptional network in Escherichia coli.
    Lemmens K; De Bie T; Dhollander T; Monsieurs P; De Moor B; Collado-Vides J; Engelen K; Marchal K
    Ann N Y Acad Sci; 2009 Mar; 1158():29-35. PubMed ID: 19348629
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Reconstruction of Escherichia coli transcriptional regulatory networks via regulon-based associations.
    Zare H; Sangurdekar D; Srivastava P; Kaveh M; Khodursky A
    BMC Syst Biol; 2009 Apr; 3():39. PubMed ID: 19366454
    [TBL] [Abstract][Full Text] [Related]  

  • 4. TimeDelay-ARACNE: Reverse engineering of gene networks from time-course data by an information theoretic approach.
    Zoppoli P; Morganella S; Ceccarelli M
    BMC Bioinformatics; 2010 Mar; 11():154. PubMed ID: 20338053
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Comparative analysis of module-based versus direct methods for reverse-engineering transcriptional regulatory networks.
    Michoel T; De Smet R; Joshi A; Van de Peer Y; Marchal K
    BMC Syst Biol; 2009 May; 3():49. PubMed ID: 19422680
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Identification of biochemical networks by S-tree based genetic programming.
    Cho DY; Cho KH; Zhang BT
    Bioinformatics; 2006 Jul; 22(13):1631-40. PubMed ID: 16585066
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles.
    Faith JJ; Hayete B; Thaden JT; Mogno I; Wierzbowski J; Cottarel G; Kasif S; Collins JJ; Gardner TS
    PLoS Biol; 2007 Jan; 5(1):e8. PubMed ID: 17214507
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Hierarchical structure and modules in the Escherichia coli transcriptional regulatory network revealed by a new top-down approach.
    Ma HW; Buer J; Zeng AP
    BMC Bioinformatics; 2004 Dec; 5():199. PubMed ID: 15603590
    [TBL] [Abstract][Full Text] [Related]  

  • 9. An integer optimization algorithm for robust identification of non-linear gene regulatory networks.
    Chemmangattuvalappil N; Task K; Banerjee I
    BMC Syst Biol; 2012 Sep; 6():119. PubMed ID: 22937832
    [TBL] [Abstract][Full Text] [Related]  

  • 10. DREAM3: network inference using dynamic context likelihood of relatedness and the inferelator.
    Madar A; Greenfield A; Vanden-Eijnden E; Bonneau R
    PLoS One; 2010 Mar; 5(3):e9803. PubMed ID: 20339551
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Recurrent neural network-based modeling of gene regulatory network using elephant swarm water search algorithm.
    Mandal S; Saha G; Pal RK
    J Bioinform Comput Biol; 2017 Aug; 15(4):1750016. PubMed ID: 28659000
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Partially observed bipartite network analysis to identify predictive connections in transcriptional regulatory networks.
    Alvarez A; Woolf PJ
    BMC Syst Biol; 2011 May; 5():86. PubMed ID: 21619639
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Inference of regulatory gene interactions from expression data using three-way mutual information.
    Watkinson J; Liang KC; Wang X; Zheng T; Anastassiou D
    Ann N Y Acad Sci; 2009 Mar; 1158():302-13. PubMed ID: 19348651
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Functional architecture of Escherichia coli: new insights provided by a natural decomposition approach.
    Freyre-González JA; Alonso-Pavón JA; Treviño-Quintanilla LG; Collado-Vides J
    Genome Biol; 2008 Oct; 9(10):R154. PubMed ID: 18954463
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Inferring large-scale gene regulatory networks using a low-order constraint-based algorithm.
    Wang M; Augusto Benedito V; Xuechun Zhao P; Udvardi M
    Mol Biosyst; 2010 Jun; 6(6):988-98. PubMed ID: 20485743
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Bayesian network expansion identifies new ROS and biofilm regulators.
    Hodges AP; Dai D; Xiang Z; Woolf P; Xi C; He Y
    PLoS One; 2010 Mar; 5(3):e9513. PubMed ID: 20209085
    [TBL] [Abstract][Full Text] [Related]  

  • 17. HiNO: an approach for inferring hierarchical organization from regulatory networks.
    Hartsperger ML; Strache R; Stümpflen V
    PLoS One; 2010 Nov; 5(11):e13698. PubMed ID: 21079808
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Interpreting patterns of gene expression: signatures of coregulation, the data processing inequality, and triplet motifs.
    Ku WL; Duggal G; Li Y; Girvan M; Ott E
    PLoS One; 2012; 7(2):e31969. PubMed ID: 22393375
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Relating gene expression data on two-component systems to functional annotations in Escherichia coli.
    Denton AM; Wu J; Townsend MK; Sule P; Prüss BM
    BMC Bioinformatics; 2008 Jun; 9():294. PubMed ID: 18578884
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Reverse engineering directed gene regulatory networks from transcriptomics and proteomics data of biomining bacterial communities with approximate Bayesian computation and steady-state signalling simulations.
    Buetti-Dinh A; Herold M; Christel S; El Hajjami M; Delogu F; Ilie O; Bellenberg S; Wilmes P; Poetsch A; Sand W; Vera M; Pivkin IV; Friedman R; Dopson M
    BMC Bioinformatics; 2020 Jan; 21(1):23. PubMed ID: 31964336
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.