These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

185 related articles for article (PubMed ID: 22385850)

  • 1. Determination of membrane-insertion free energies by molecular dynamics simulations.
    Gumbart J; Roux B
    Biophys J; 2012 Feb; 102(4):795-801. PubMed ID: 22385850
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Outer membrane phospholipase A in phospholipid bilayers: a model system for concerted computational and experimental investigations of amino acid side chain partitioning into lipid bilayers.
    Fleming PJ; Freites JA; Moon CP; Tobias DJ; Fleming KG
    Biochim Biophys Acta; 2012 Feb; 1818(2):126-34. PubMed ID: 21816133
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Local Bilayer Hydrophobicity Modulates Membrane Protein Stability.
    Marx DC; Fleming KG
    J Am Chem Soc; 2021 Jan; 143(2):764-772. PubMed ID: 33412852
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Side-chain hydrophobicity scale derived from transmembrane protein folding into lipid bilayers.
    Moon CP; Fleming KG
    Proc Natl Acad Sci U S A; 2011 Jun; 108(25):10174-7. PubMed ID: 21606332
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Influence of Protein Scaffold on Side-Chain Transfer Free Energies.
    Marx DC; Fleming KG
    Biophys J; 2017 Aug; 113(3):597-604. PubMed ID: 28793214
    [TBL] [Abstract][Full Text] [Related]  

  • 6. The importance of membrane defects-lessons from simulations.
    Bennett WF; Tieleman DP
    Acc Chem Res; 2014 Aug; 47(8):2244-51. PubMed ID: 24892900
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Modeling dimerizations of transmembrane proteins using Brownian dynamics simulations.
    Cui M; Mezei M; Osman R
    J Comput Aided Mol Des; 2008 Aug; 22(8):553-61. PubMed ID: 18338226
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Refining the treatment of membrane proteins by coarse-grained models.
    Vorobyov I; Kim I; Chu ZT; Warshel A
    Proteins; 2016 Jan; 84(1):92-117. PubMed ID: 26531155
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Outer Membrane Protein Folding and Topology from a Computational Transfer Free Energy Scale.
    Lin M; Gessmann D; Naveed H; Liang J
    J Am Chem Soc; 2016 Mar; 138(8):2592-601. PubMed ID: 26860422
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Decrypting protein insertion through the translocon with free-energy calculations.
    Gumbart JC; Chipot C
    Biochim Biophys Acta; 2016 Jul; 1858(7 Pt B):1663-71. PubMed ID: 26896694
    [TBL] [Abstract][Full Text] [Related]  

  • 11. The importance of the membrane interface as the reference state for membrane protein stability.
    Ulmschneider JP; Smith JC; White SH; Ulmschneider MB
    Biochim Biophys Acta Biomembr; 2018 Dec; 1860(12):2539-2548. PubMed ID: 30293965
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Potential of mean force analysis of the self-association of leucine-rich transmembrane α-helices: difference between atomistic and coarse-grained simulations.
    Nishizawa M; Nishizawa K
    J Chem Phys; 2014 Aug; 141(7):075101. PubMed ID: 25149815
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Critical Comparison of Biomembrane Force Fields: Protein-Lipid Interactions at the Membrane Interface.
    Sandoval-Perez A; Pluhackova K; Böckmann RA
    J Chem Theory Comput; 2017 May; 13(5):2310-2321. PubMed ID: 28388089
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Peptide partitioning properties from direct insertion studies.
    Ulmschneider MB; Smith JC; Ulmschneider JP
    Biophys J; 2010 Jun; 98(12):L60-2. PubMed ID: 20550886
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Free-energy cost for translocon-assisted insertion of membrane proteins.
    Gumbart J; Chipot C; Schulten K
    Proc Natl Acad Sci U S A; 2011 Mar; 108(9):3596-601. PubMed ID: 21317362
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Peptides design based on transmembrane Escherichia coli's OmpA protein through molecular dynamics simulations in water-dodecane interfaces.
    Aguilera-Segura SM; Núñez Vélez V; Achenie L; Álvarez Solano O; Torres R; González Barrios AF
    J Mol Graph Model; 2016 Jul; 68():216-223. PubMed ID: 27474866
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Overcoming hysteresis to attain reversible equilibrium folding for outer membrane phospholipase A in phospholipid bilayers.
    Moon CP; Kwon S; Fleming KG
    J Mol Biol; 2011 Oct; 413(2):484-94. PubMed ID: 21888919
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Reconciling the roles of kinetic and thermodynamic factors in membrane-protein insertion.
    Gumbart JC; Teo I; Roux B; Schulten K
    J Am Chem Soc; 2013 Feb; 135(6):2291-7. PubMed ID: 23298280
    [TBL] [Abstract][Full Text] [Related]  

  • 19. A continuum method for determining membrane protein insertion energies and the problem of charged residues.
    Choe S; Hecht KA; Grabe M
    J Gen Physiol; 2008 Jun; 131(6):563-73. PubMed ID: 18474636
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Prediction of the translocon-mediated membrane insertion free energies of protein sequences.
    Park Y; Helms V
    Bioinformatics; 2008 May; 24(10):1271-7. PubMed ID: 18388143
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.