These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

146 related articles for article (PubMed ID: 22393380)

  • 1. Probabilistic inference for nucleosome positioning with MNase-based or sonicated short-read data.
    Zhang X; Robertson G; Woo S; Hoffman BG; Gottardo R
    PLoS One; 2012; 7(2):e32095. PubMed ID: 22393380
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Locus co-occupancy, nucleosome positioning, and H3K4me1 regulate the functionality of FOXA2-, HNF4A-, and PDX1-bound loci in islets and liver.
    Hoffman BG; Robertson G; Zavaglia B; Beach M; Cullum R; Lee S; Soukhatcheva G; Li L; Wederell ED; Thiessen N; Bilenky M; Cezard T; Tam A; Kamoh B; Birol I; Dai D; Zhao Y; Hirst M; Verchere CB; Helgason CD; Marra MA; Jones SJ; Hoodless PA
    Genome Res; 2010 Aug; 20(8):1037-51. PubMed ID: 20551221
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Genome-wide mapping of nucleosome occupancy, histone modifications, and gene expression using next-generation sequencing technology.
    Wei G; Hu G; Cui K; Zhao K
    Methods Enzymol; 2012; 513():297-313. PubMed ID: 22929775
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Characterization of the Nucleosome Landscape by Micrococcal Nuclease-Sequencing (MNase-seq).
    Hoeijmakers WAM; Bártfai R
    Methods Mol Biol; 2018; 1689():83-101. PubMed ID: 29027167
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Subtracting the sequence bias from partially digested MNase-seq data reveals a general contribution of TFIIS to nucleosome positioning.
    Gutiérrez G; Millán-Zambrano G; Medina DA; Jordán-Pla A; Pérez-Ortín JE; Peñate X; Chávez S
    Epigenetics Chromatin; 2017 Dec; 10(1):58. PubMed ID: 29212533
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Chemical map-based prediction of nucleosome positioning using the Bioconductor package nuCpos.
    Kato H; Shimizu M; Urano T
    BMC Bioinformatics; 2021 Jun; 22(1):322. PubMed ID: 34120589
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Mapping nucleosome positions using DNase-seq.
    Zhong J; Luo K; Winter PS; Crawford GE; Iversen ES; Hartemink AJ
    Genome Res; 2016 Mar; 26(3):351-64. PubMed ID: 26772197
    [TBL] [Abstract][Full Text] [Related]  

  • 8. The Pioneer Transcription Factor FoxA Maintains an Accessible Nucleosome Configuration at Enhancers for Tissue-Specific Gene Activation.
    Iwafuchi-Doi M; Donahue G; Kakumanu A; Watts JA; Mahony S; Pugh BF; Lee D; Kaestner KH; Zaret KS
    Mol Cell; 2016 Apr; 62(1):79-91. PubMed ID: 27058788
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Profiling Nucleosome Occupancy by MNase-seq: Experimental Protocol and Computational Analysis.
    Pajoro A; Muiño JM; Angenent GC; Kaufmann K
    Methods Mol Biol; 2018; 1675():167-181. PubMed ID: 29052192
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Application of MNase-Seq in the Global Mapping of Nucleosome Positioning in Plants.
    Zhang W; Jiang J
    Methods Mol Biol; 2018; 1830():353-366. PubMed ID: 30043381
    [TBL] [Abstract][Full Text] [Related]  

  • 11. High-Resolution ChIP-MNase Mapping of Nucleosome Positions at Selected Genomic Loci and Alleles.
    van Essen D; Oruba A; Saccani S
    Methods Mol Biol; 2021; 2351():123-145. PubMed ID: 34382187
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Genome-wide profiling of nucleosome sensitivity and chromatin accessibility in Drosophila melanogaster.
    Chereji RV; Kan TW; Grudniewska MK; Romashchenko AV; Berezikov E; Zhimulev IF; Guryev V; Morozov AV; Moshkin YM
    Nucleic Acids Res; 2016 Feb; 44(3):1036-51. PubMed ID: 26429969
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Bioinformatic Analysis of Nucleosome and Histone Variant Positioning.
    Mieczkowski J; Tolstorukov MY
    Methods Mol Biol; 2018; 1832():185-203. PubMed ID: 30073528
    [TBL] [Abstract][Full Text] [Related]  

  • 14. The effect of micrococcal nuclease digestion on nucleosome positioning data.
    Chung HR; Dunkel I; Heise F; Linke C; Krobitsch S; Ehrenhofer-Murray AE; Sperling SR; Vingron M
    PLoS One; 2010 Dec; 5(12):e15754. PubMed ID: 21206756
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Distinct features of lamin A-interacting chromatin domains mapped by ChIP-sequencing from sonicated or micrococcal nuclease-digested chromatin.
    Lund EG; Duband-Goulet I; Oldenburg A; Buendia B; Collas P
    Nucleus; 2015; 6(1):30-9. PubMed ID: 25602132
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Creating 2D Occupancy Plots Using plot2DO.
    Beati P; Chereji RV
    Methods Mol Biol; 2020; 2117():93-108. PubMed ID: 31960374
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Nucleosome Density ChIP-Seq Identifies Distinct Chromatin Modification Signatures Associated with MNase Accessibility.
    Lorzadeh A; Bilenky M; Hammond C; Knapp DJHF; Li L; Miller PH; Carles A; Heravi-Moussavi A; Gakkhar S; Moksa M; Eaves CJ; Hirst M
    Cell Rep; 2016 Nov; 17(8):2112-2124. PubMed ID: 27851972
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Asymmetric nucleosomes flank promoters in the budding yeast genome.
    Ramachandran S; Zentner GE; Henikoff S
    Genome Res; 2015 Mar; 25(3):381-90. PubMed ID: 25491770
    [TBL] [Abstract][Full Text] [Related]  

  • 19. A computational approach to map nucleosome positions and alternative chromatin states with base pair resolution.
    Zhou X; Blocker AW; Airoldi EM; O'Shea EK
    Elife; 2016 Sep; 5():. PubMed ID: 27623011
    [TBL] [Abstract][Full Text] [Related]  

  • 20. ChIPseqR: analysis of ChIP-seq experiments.
    Humburg P; Helliwell CA; Bulger D; Stone G
    BMC Bioinformatics; 2011 Jan; 12():39. PubMed ID: 21281468
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.