These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

180 related articles for article (PubMed ID: 22399676)

  • 1. Evolutionary inaccuracy of pairwise structural alignments.
    Sadowski MI; Taylor WR
    Bioinformatics; 2012 May; 28(9):1209-15. PubMed ID: 22399676
    [TBL] [Abstract][Full Text] [Related]  

  • 2. CAB-Align: A Flexible Protein Structure Alignment Method Based on the Residue-Residue Contact Area.
    Terashi G; Takeda-Shitaka M
    PLoS One; 2015; 10(10):e0141440. PubMed ID: 26502070
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Fr-TM-align: a new protein structural alignment method based on fragment alignments and the TM-score.
    Pandit SB; Skolnick J
    BMC Bioinformatics; 2008 Dec; 9():531. PubMed ID: 19077267
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Comparative analysis of protein structure alignments.
    Mayr G; Domingues FS; Lackner P
    BMC Struct Biol; 2007 Jul; 7():50. PubMed ID: 17672887
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Large-scale comparison of protein sequence alignment algorithms with structure alignments.
    Sauder JM; Arthur JW; Dunbrack RL
    Proteins; 2000 Jul; 40(1):6-22. PubMed ID: 10813826
    [TBL] [Abstract][Full Text] [Related]  

  • 6. High quality protein sequence alignment by combining structural profile prediction and profile alignment using SABER-TOOTH.
    Teichert F; Minning J; Bastolla U; Porto M
    BMC Bioinformatics; 2010 May; 11():251. PubMed ID: 20470364
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Accuracy of structure-based sequence alignment of automatic methods.
    Kim C; Lee B
    BMC Bioinformatics; 2007 Sep; 8():355. PubMed ID: 17883866
    [TBL] [Abstract][Full Text] [Related]  

  • 8. SVM-dependent pairwise HMM: an application to protein pairwise alignments.
    Orlando G; Raimondi D; Khan T; Lenaerts T; Vranken WF
    Bioinformatics; 2017 Dec; 33(24):3902-3908. PubMed ID: 28666322
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Improving the alignment quality of consistency based aligners with an evaluation function using synonymous protein words.
    Lin HN; Notredame C; Chang JM; Sung TY; Hsu WL
    PLoS One; 2011; 6(12):e27872. PubMed ID: 22163274
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Structure alignment of membrane proteins: Accuracy of available tools and a consensus strategy.
    Stamm M; Forrest LR
    Proteins; 2015 Sep; 83(9):1720-32. PubMed ID: 26178143
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Vorolign--fast structural alignment using Voronoi contacts.
    Birzele F; Gewehr JE; Csaba G; Zimmer R
    Bioinformatics; 2007 Jan; 23(2):e205-11. PubMed ID: 17237093
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Stochastic pairwise alignments.
    Mückstein U; Hofacker IL; Stadler PF
    Bioinformatics; 2002; 18 Suppl 2():S153-60. PubMed ID: 12385998
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Structure alignment based on coding of local geometric measures.
    Chang PL; Rinne AW; Dewey TG
    BMC Bioinformatics; 2006 Jul; 7():346. PubMed ID: 16842622
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Improving pairwise sequence alignment accuracy using near-optimal protein sequence alignments.
    Sierk ML; Smoot ME; Bass EJ; Pearson WR
    BMC Bioinformatics; 2010 Mar; 11():146. PubMed ID: 20307279
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Formatt: Correcting protein multiple structural alignments by incorporating sequence alignment.
    Daniels NM; Nadimpalli S; Cowen LJ
    BMC Bioinformatics; 2012 Oct; 13():259. PubMed ID: 23039758
    [TBL] [Abstract][Full Text] [Related]  

  • 16. A new progressive-iterative algorithm for multiple structure alignment.
    Lupyan D; Leo-Macias A; Ortiz AR
    Bioinformatics; 2005 Aug; 21(15):3255-63. PubMed ID: 15941743
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Extracting multiple structural alignments from pairwise alignments: a comparison of a rigorous and a heuristic approach.
    Sandelin E
    Bioinformatics; 2005 Apr; 21(7):1002-9. PubMed ID: 15531607
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Analysis on sliding helices and strands in protein structural comparisons: a case study with protein kinases.
    Gowri VS; Anamika K; Gore S; Srinivasan N
    J Biosci; 2007 Aug; 32(5):921-8. PubMed ID: 17914234
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Alignment of multiple protein structures based on sequence and structure features.
    Madhusudhan MS; Webb BM; Marti-Renom MA; Eswar N; Sali A
    Protein Eng Des Sel; 2009 Sep; 22(9):569-74. PubMed ID: 19587024
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Adaptive Smith-Waterman residue match seeding for protein structural alignment.
    Topham CM; Rouquier M; Tarrat N; André I
    Proteins; 2013 Oct; 81(10):1823-39. PubMed ID: 23720362
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.