196 related articles for article (PubMed ID: 22406342)
1. From plant gene regulatory grids to network dynamics.
Mejia-Guerra MK; Pomeranz M; Morohashi K; Grotewold E
Biochim Biophys Acta; 2012 May; 1819(5):454-65. PubMed ID: 22406342
[TBL] [Abstract][Full Text] [Related]
2. Distinct tissue-specific transcriptional regulation revealed by gene regulatory networks in maize.
Huang J; Zheng J; Yuan H; McGinnis K
BMC Plant Biol; 2018 Jun; 18(1):111. PubMed ID: 29879919
[TBL] [Abstract][Full Text] [Related]
3. Temporal transcriptional logic of dynamic regulatory networks underlying nitrogen signaling and use in plants.
Varala K; Marshall-Colón A; Cirrone J; Brooks MD; Pasquino AV; Léran S; Mittal S; Rock TM; Edwards MB; Kim GJ; Ruffel S; McCombie WR; Shasha D; Coruzzi GM
Proc Natl Acad Sci U S A; 2018 Jun; 115(25):6494-6499. PubMed ID: 29769331
[TBL] [Abstract][Full Text] [Related]
4. Q&A: How do gene regulatory networks control environmental responses in plants?
Sun Y; Dinneny JR
BMC Biol; 2018 Apr; 16(1):38. PubMed ID: 29642893
[TBL] [Abstract][Full Text] [Related]
5. Establishing the Architecture of Plant Gene Regulatory Networks.
Yang F; Ouma WZ; Li W; Doseff AI; Grotewold E
Methods Enzymol; 2016; 576():251-304. PubMed ID: 27480690
[TBL] [Abstract][Full Text] [Related]
6. From Genes to Networks: Characterizing Gene-Regulatory Interactions in Plants.
Kaufmann K; Chen D
Methods Mol Biol; 2017; 1629():1-11. PubMed ID: 28623575
[TBL] [Abstract][Full Text] [Related]
7. Function, dynamics and evolution of network motif modules in integrated gene regulatory networks of worm and plant.
Defoort J; Van de Peer Y; Vermeirssen V
Nucleic Acids Res; 2018 Jul; 46(13):6480-6503. PubMed ID: 29873777
[TBL] [Abstract][Full Text] [Related]
8. Inference of plant gene regulatory networks using data-driven methods: A practical overview.
Kulkarni SR; Vandepoele K
Biochim Biophys Acta Gene Regul Mech; 2020 Jun; 1863(6):194447. PubMed ID: 31678628
[TBL] [Abstract][Full Text] [Related]
9. MINI-AC: inference of plant gene regulatory networks using bulk or single-cell accessible chromatin profiles.
Manosalva Pérez N; Ferrari C; Engelhorn J; Depuydt T; Nelissen H; Hartwig T; Vandepoele K
Plant J; 2024 Jan; 117(1):280-301. PubMed ID: 37788349
[TBL] [Abstract][Full Text] [Related]
10. From milliseconds to lifetimes: tracking the dynamic behavior of transcription factors in gene networks.
Li Y; Varala K; Coruzzi GM
Trends Genet; 2015 Sep; 31(9):509-15. PubMed ID: 26072453
[TBL] [Abstract][Full Text] [Related]
11. Combinatorial control of plant gene expression.
Brkljacic J; Grotewold E
Biochim Biophys Acta Gene Regul Mech; 2017 Jan; 1860(1):31-40. PubMed ID: 27427484
[TBL] [Abstract][Full Text] [Related]
12. Feedbacks from the metabolic network to the genetic network reveal regulatory modules in E. coli and B. subtilis.
Kumar S; Mahajan S; Jain S
PLoS One; 2018; 13(10):e0203311. PubMed ID: 30286091
[TBL] [Abstract][Full Text] [Related]
13. Synergistic regulatory networks mediated by microRNAs and transcription factors under drought, heat and salt stresses in Oryza Sativa spp.
Nigam D; Kumar S; Mishra DC; Rai A; Smita S; Saha A
Gene; 2015 Jan; 555(2):127-39. PubMed ID: 25445270
[TBL] [Abstract][Full Text] [Related]
14. Deep conservation of cis-regulatory elements in metazoans.
Maeso I; Irimia M; Tena JJ; Casares F; Gómez-Skarmeta JL
Philos Trans R Soc Lond B Biol Sci; 2013 Dec; 368(1632):20130020. PubMed ID: 24218633
[TBL] [Abstract][Full Text] [Related]
15. Design of orthogonal regulatory systems for modulating gene expression in plants.
Belcher MS; Vuu KM; Zhou A; Mansoori N; Agosto Ramos A; Thompson MG; Scheller HV; Loqué D; Shih PM
Nat Chem Biol; 2020 Aug; 16(8):857-865. PubMed ID: 32424304
[TBL] [Abstract][Full Text] [Related]
16. Gene regulatory networks by transcription factors and microRNAs in breast cancer.
Qin S; Ma F; Chen L
Bioinformatics; 2015 Jan; 31(1):76-83. PubMed ID: 25189779
[TBL] [Abstract][Full Text] [Related]
17. Identification of plant transcription factor target sequences.
Franco-Zorrilla JM; Solano R
Biochim Biophys Acta Gene Regul Mech; 2017 Jan; 1860(1):21-30. PubMed ID: 27155066
[TBL] [Abstract][Full Text] [Related]
18. Genome-wide mapping of transcription factor binding reveals developmental process integration and a fresh look at evolutionary dynamics.
Yant L
Am J Bot; 2012 Feb; 99(2):277-90. PubMed ID: 22268222
[TBL] [Abstract][Full Text] [Related]
19. A high-throughput gateway-compatible yeast one-hybrid screen to detect protein-DNA interactions.
Hens K; Feuz JD; Deplancke B
Methods Mol Biol; 2012; 786():335-55. PubMed ID: 21938636
[TBL] [Abstract][Full Text] [Related]
20. A matter of time - How transient transcription factor interactions create dynamic gene regulatory networks.
Swift J; Coruzzi GM
Biochim Biophys Acta Gene Regul Mech; 2017 Jan; 1860(1):75-83. PubMed ID: 27546191
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]