BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

182 related articles for article (PubMed ID: 22409323)

  • 1. Spectral clustering in peptidomics studies allows homology searching and modification profiling: HomClus, a versatile tool.
    Menschaert G; Hayakawa E; Schoofs L; Van Criekinge W; Baggerman G
    J Proteome Res; 2012 May; 11(5):2774-85. PubMed ID: 22409323
    [TBL] [Abstract][Full Text] [Related]  

  • 2. CHASE, a charge-assisted sequencing algorithm for automated homology-based protein identifications with matrix-assisted laser desorption/ionization time-of-flight post-source decay fragmentation data.
    Raucci G; Gabrielli M; Novelli S; Picariello G; Collins SH
    J Mass Spectrom; 2005 Apr; 40(4):475-88. PubMed ID: 15712359
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Sequit: software for de novo peptide sequencing by matrix-assisted laser desorption/ionization post-source decay mass spectrometry.
    Demine R; Walden P
    Rapid Commun Mass Spectrom; 2004; 18(8):907-13. PubMed ID: 15095361
    [TBL] [Abstract][Full Text] [Related]  

  • 4. MALDI-TOF/TOF de novo sequence analysis of 2-D PAGE-separated proteins from Halorhodospira halophila, a bacterium with unsequenced genome.
    Samyn B; Sergeant K; Memmi S; Debyser G; Devreese B; Van Beeumen J
    Electrophoresis; 2006 Jul; 27(13):2702-11. PubMed ID: 16739227
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Fast tandem mass spectra-based protein identification regardless of the number of spectra or potential modifications examined.
    Falkner J; Andrews P
    Bioinformatics; 2005 May; 21(10):2177-84. PubMed ID: 15746284
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Rapid identification of protein biomarkers of Escherichia coli O157:H7 by matrix-assisted laser desorption ionization-time-of-flight-time-of-flight mass spectrometry and top-down proteomics.
    Fagerquist CK; Garbus BR; Miller WG; Williams KE; Yee E; Bates AH; Boyle S; Harden LA; Cooley MB; Mandrell RE
    Anal Chem; 2010 Apr; 82(7):2717-25. PubMed ID: 20232878
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Improved protein identification efficiency by mass spectrometry using N-terminal chemical derivatization of peptides from Angiostrongylus costaricensis, a nematode with unknown genome.
    León IR; Neves-Ferreira AG; Valente RH; Mota EM; Lenzi HL; Perales J
    J Mass Spectrom; 2007 Oct; 42(10):1363-74. PubMed ID: 17902111
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Improved protein identification efficiency by mass spectrometry using N-terminal chemical derivatization of peptides from Angiostrongylus costaricensis, a nematode with unknown genome.
    León IR; Neves-Ferreira AG; Valente RH; Mota EM; Lenzi HL; Perales J
    J Mass Spectrom; 2007 Jun; 42(6):781-92. PubMed ID: 17511016
    [TBL] [Abstract][Full Text] [Related]  

  • 9. De novo sequencing methods in proteomics.
    Hughes C; Ma B; Lajoie GA
    Methods Mol Biol; 2010; 604():105-21. PubMed ID: 20013367
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Sequence similarity-driven proteomics in organisms with unknown genomes by LC-MS/MS and automated de novo sequencing.
    Waridel P; Frank A; Thomas H; Surendranath V; Sunyaev S; Pevzner P; Shevchenko A
    Proteomics; 2007 Jul; 7(14):2318-29. PubMed ID: 17623296
    [TBL] [Abstract][Full Text] [Related]  

  • 11. VEMS 3.0: algorithms and computational tools for tandem mass spectrometry based identification of post-translational modifications in proteins.
    Matthiesen R; Trelle MB; Højrup P; Bunkenborg J; Jensen ON
    J Proteome Res; 2005; 4(6):2338-47. PubMed ID: 16335983
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Spectral clustering in peptidomics studies helps to unravel modification profile of biologically active peptides and enhances peptide identification rate.
    Menschaert G; Vandekerckhove TT; Landuyt B; Hayakawa E; Schoofs L; Luyten W; Van Criekinge W
    Proteomics; 2009 Sep; 9(18):4381-8. PubMed ID: 19658089
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Identification of proteins from non-model organisms using mass spectrometry: application to a hibernating mammal.
    Russeth KP; Higgins L; Andrews MT
    J Proteome Res; 2006 Apr; 5(4):829-39. PubMed ID: 16602690
    [TBL] [Abstract][Full Text] [Related]  

  • 14. De novo sequencing of tryptic peptides derived from Deinococcus radiodurans ribosomal proteins using 157 nm photodissociation MALDI TOF/TOF mass spectrometry.
    Zhang L; Reilly JP
    J Proteome Res; 2010 Jun; 9(6):3025-34. PubMed ID: 20377247
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Algorithms for the de novo sequencing of peptides from tandem mass spectra.
    Allmer J
    Expert Rev Proteomics; 2011 Oct; 8(5):645-57. PubMed ID: 21999834
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Comparison of laser-induced dissociation and high-energy collision-induced dissociation using matrix-assisted laser desorption/ionization tandem time-of-flight (MALDI-TOF/TOF) for peptide and protein identification.
    Macht M; Asperger A; Deininger SO
    Rapid Commun Mass Spectrom; 2004; 18(18):2093-105. PubMed ID: 15378722
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Peptide sequence analysis.
    Medzihradszky KF
    Methods Enzymol; 2005; 402():209-44. PubMed ID: 16401511
    [TBL] [Abstract][Full Text] [Related]  

  • 18. A spectral clustering approach to MS/MS identification of post-translational modifications.
    Falkner JA; Falkner JW; Yocum AK; Andrews PC
    J Proteome Res; 2008 Nov; 7(11):4614-22. PubMed ID: 18800783
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Increased identification of peptides by enhanced data processing of high-resolution MALDI TOF/TOF mass spectra prior to database searching.
    Rejtar T; Chen HS; Andreev V; Moskovets E; Karger BL
    Anal Chem; 2004 Oct; 76(20):6017-28. PubMed ID: 15481949
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Amino acid sequence determination of protein biomarkers of Campylobacter upsaliensis and C. helveticus by "composite" sequence proteomic analysis.
    Fagerquist CK
    J Proteome Res; 2007 Jul; 6(7):2539-49. PubMed ID: 17508732
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.