105 related articles for article (PubMed ID: 22432920)
1. Evolution of the potential energy landscape with static pulling force for two model proteins.
Wales DJ; Head-Gordon T
J Phys Chem B; 2012 Jul; 116(29):8394-411. PubMed ID: 22432920
[TBL] [Abstract][Full Text] [Related]
2. Computer simulations and theory of protein translocation.
Makarov DE
Acc Chem Res; 2009 Feb; 42(2):281-9. PubMed ID: 19072704
[TBL] [Abstract][Full Text] [Related]
3. A path planning-based study of protein folding with a case study of hairpin formation in protein G and L.
Song G; Thomas S; Dill KA; Scholtz JM; Amato NM
Pac Symp Biocomput; 2003; ():240-51. PubMed ID: 12603032
[TBL] [Abstract][Full Text] [Related]
4. Force-based analysis of multidimensional energy landscapes: application of dynamic force spectroscopy and steered molecular dynamics simulations to an antibody fragment-peptide complex.
Morfill J; Neumann J; Blank K; Steinbach U; Puchner EM; Gottschalk KE; Gaub HE
J Mol Biol; 2008 Sep; 381(5):1253-66. PubMed ID: 18619976
[TBL] [Abstract][Full Text] [Related]
5. Molecular mechanisms for cooperative folding of proteins.
Hao MH; Scheraga HA
J Mol Biol; 1998 Apr; 277(4):973-83. PubMed ID: 9545385
[TBL] [Abstract][Full Text] [Related]
6. Beta-hairpin folding simulations in atomistic detail using an implicit solvent model.
Zagrovic B; Sorin EJ; Pande V
J Mol Biol; 2001 Oct; 313(1):151-69. PubMed ID: 11601853
[TBL] [Abstract][Full Text] [Related]
7. Free energy landscape of protein folding in water: explicit vs. implicit solvent.
Zhou R
Proteins; 2003 Nov; 53(2):148-61. PubMed ID: 14517967
[TBL] [Abstract][Full Text] [Related]
8. Exploring the free-energy landscape of a short peptide using an average force.
Chipot C; Hénin J
J Chem Phys; 2005 Dec; 123(24):244906. PubMed ID: 16396572
[TBL] [Abstract][Full Text] [Related]
9. Tracking polypeptide folds on the free energy surface: effects of the chain length and sequence.
Brukhno AV; Ricchiuto P; Auer S
J Phys Chem B; 2012 Jul; 116(29):8703-13. PubMed ID: 22624618
[TBL] [Abstract][Full Text] [Related]
10. An experimental investigation of conformational fluctuations in proteins G and L.
Tunnicliffe RB; Waby JL; Williams RJ; Williamson MP
Structure; 2005 Nov; 13(11):1677-84. PubMed ID: 16271891
[TBL] [Abstract][Full Text] [Related]
11. Free energy surfaces of beta-hairpin and alpha-helical peptides generated by replica exchange molecular dynamics with the AGBNP implicit solvent model.
Felts AK; Harano Y; Gallicchio E; Levy RM
Proteins; 2004 Aug; 56(2):310-21. PubMed ID: 15211514
[TBL] [Abstract][Full Text] [Related]
12. Energy landscape, structure and rate effects on strength properties of alpha-helical proteins.
Bertaud J; Hester J; Jimenez DD; Buehler MJ
J Phys Condens Matter; 2010 Jan; 22(3):035102. PubMed ID: 21386278
[TBL] [Abstract][Full Text] [Related]
13. Topography of the free-energy landscape probed via mechanical unfolding of proteins.
Kirmizialtin S; Huang L; Makarov DE
J Chem Phys; 2005 Jun; 122(23):234915. PubMed ID: 16008495
[TBL] [Abstract][Full Text] [Related]
14. Inherent structure analysis of protein folding.
Kim J; Keyes T
J Phys Chem B; 2007 Mar; 111(10):2647-57. PubMed ID: 17311447
[TBL] [Abstract][Full Text] [Related]
15. The role of sequence and structure in protein folding kinetics; the diffusion-collision model applied to proteins L and G.
Islam SA; Karplus M; Weaver DL
Structure; 2004 Oct; 12(10):1833-45. PubMed ID: 15458632
[TBL] [Abstract][Full Text] [Related]
16. The unfolded ensemble and folding mechanism of the C-terminal GB1 beta-hairpin.
Bonomi M; Branduardi D; Gervasio FL; Parrinello M
J Am Chem Soc; 2008 Oct; 130(42):13938-44. PubMed ID: 18811160
[TBL] [Abstract][Full Text] [Related]
17. Pulling geometry defines the mechanical resistance of a beta-sheet protein.
Brockwell DJ; Paci E; Zinober RC; Beddard GS; Olmsted PD; Smith DA; Perham RN; Radford SE
Nat Struct Biol; 2003 Sep; 10(9):731-7. PubMed ID: 12923573
[TBL] [Abstract][Full Text] [Related]
18. New force replica exchange method and protein folding pathways probed by force-clamp technique.
Kouza M; Hu CK; Li MS
J Chem Phys; 2008 Jan; 128(4):045103. PubMed ID: 18248010
[TBL] [Abstract][Full Text] [Related]
19. Backbone dynamics, fast folding, and secondary structure formation in helical proteins and peptides.
Hardin C; Luthey-Schulten Z; Wolynes PG
Proteins; 1999 Feb; 34(3):281-94. PubMed ID: 10024016
[TBL] [Abstract][Full Text] [Related]
20. Mechanical unfolding of a beta-hairpin using molecular dynamics.
Bryant Z; Pande VS; Rokhsar DS
Biophys J; 2000 Feb; 78(2):584-9. PubMed ID: 10653773
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]