173 related articles for article (PubMed ID: 22434826)
21. Saccharomyces genome database provides new regulation data.
Costanzo MC; Engel SR; Wong ED; Lloyd P; Karra K; Chan ET; Weng S; Paskov KM; Roe GR; Binkley G; Hitz BC; Cherry JM
Nucleic Acids Res; 2014 Jan; 42(Database issue):D717-25. PubMed ID: 24265222
[TBL] [Abstract][Full Text] [Related]
22. Sequence profiling of the Saccharomyces cerevisiae genome permits deconvolution of unique and multialigned reads for variant detection.
Jubin C; Serero A; Loeillet S; Barillot E; Nicolas A
G3 (Bethesda); 2014 Apr; 4(4):707-15. PubMed ID: 24558267
[TBL] [Abstract][Full Text] [Related]
23. Gene Ontology annotations at SGD: new data sources and annotation methods.
Hong EL; Balakrishnan R; Dong Q; Christie KR; Park J; Binkley G; Costanzo MC; Dwight SS; Engel SR; Fisk DG; Hirschman JE; Hitz BC; Krieger CJ; Livstone MS; Miyasato SR; Nash RS; Oughtred R; Skrzypek MS; Weng S; Wong ED; Zhu KK; Dolinski K; Botstein D; Cherry JM
Nucleic Acids Res; 2008 Jan; 36(Database issue):D577-81. PubMed ID: 17982175
[TBL] [Abstract][Full Text] [Related]
24. Transcriptome visualization and data availability at the Saccharomyces Genome Database.
Ng PC; Wong ED; MacPherson KA; Aleksander S; Argasinska J; Dunn B; Nash RS; Skrzypek MS; Gondwe F; Jha S; Karra K; Weng S; Miyasato S; Simison M; Engel SR; Cherry JM
Nucleic Acids Res; 2020 Jan; 48(D1):D743-D748. PubMed ID: 31612944
[TBL] [Abstract][Full Text] [Related]
25. Curated protein information in the Saccharomyces genome database.
Hellerstedt ST; Nash RS; Weng S; Paskov KM; Wong ED; Karra K; Engel SR; Cherry JM
Database (Oxford); 2017 Jan; 2017(1):. PubMed ID: 28365727
[TBL] [Abstract][Full Text] [Related]
26. Ashbya Genome Database 3.0: a cross-species genome and transcriptome browser for yeast biologists.
Gattiker A; Rischatsch R; Demougin P; Voegeli S; Dietrich FS; Philippsen P; Primig M
BMC Genomics; 2007 Jan; 8():9. PubMed ID: 17212814
[TBL] [Abstract][Full Text] [Related]
27. Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms.
Christie KR; Weng S; Balakrishnan R; Costanzo MC; Dolinski K; Dwight SS; Engel SR; Feierbach B; Fisk DG; Hirschman JE; Hong EL; Issel-Tarver L; Nash R; Sethuraman A; Starr B; Theesfeld CL; Andrada R; Binkley G; Dong Q; Lane C; Schroeder M; Botstein D; Cherry JM
Nucleic Acids Res; 2004 Jan; 32(Database issue):D311-4. PubMed ID: 14681421
[TBL] [Abstract][Full Text] [Related]
28. New mutant phenotype data curation system in the Saccharomyces Genome Database.
Costanzo MC; Skrzypek MS; Nash R; Wong E; Binkley G; Engel SR; Hitz B; Hong EL; Cherry JM;
Database (Oxford); 2009; 2009():bap001. PubMed ID: 20157474
[TBL] [Abstract][Full Text] [Related]
29. Integrating functional genomic information into the Saccharomyces genome database.
Ball CA; Dolinski K; Dwight SS; Harris MA; Issel-Tarver L; Kasarskis A; Scafe CR; Sherlock G; Binkley G; Jin H; Kaloper M; Orr SD; Schroeder M; Weng S; Zhu Y; Botstein D; Cherry JM
Nucleic Acids Res; 2000 Jan; 28(1):77-80. PubMed ID: 10592186
[TBL] [Abstract][Full Text] [Related]
30. New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources.
Engel SR; Wong ED; Nash RS; Aleksander S; Alexander M; Douglass E; Karra K; Miyasato SR; Simison M; Skrzypek MS; Weng S; Cherry JM
Genetics; 2022 Apr; 220(4):. PubMed ID: 34897464
[TBL] [Abstract][Full Text] [Related]
31. Saccharomyces genome database update: server architecture, pan-genome nomenclature, and external resources.
Wong ED; Miyasato SR; Aleksander S; Karra K; Nash RS; Skrzypek MS; Weng S; Engel SR; Cherry JM
Genetics; 2023 May; 224(1):. PubMed ID: 36607068
[TBL] [Abstract][Full Text] [Related]
32. CvManGO, a method for leveraging computational predictions to improve literature-based Gene Ontology annotations.
Park J; Costanzo MC; Balakrishnan R; Cherry JM; Hong EL
Database (Oxford); 2012; 2012():bas001. PubMed ID: 22434836
[TBL] [Abstract][Full Text] [Related]
33. SGD: Saccharomyces Genome Database.
Cherry JM; Adler C; Ball C; Chervitz SA; Dwight SS; Hester ET; Jia Y; Juvik G; Roe T; Schroeder M; Weng S; Botstein D
Nucleic Acids Res; 1998 Jan; 26(1):73-9. PubMed ID: 9399804
[TBL] [Abstract][Full Text] [Related]
34. Using computational predictions to improve literature-based Gene Ontology annotations: a feasibility study.
Costanzo MC; Park J; Balakrishnan R; Cherry JM; Hong EL
Database (Oxford); 2011; 2011():bar004. PubMed ID: 21411447
[TBL] [Abstract][Full Text] [Related]
35. Form and function of topologically associating genomic domains in budding yeast.
Eser U; Chandler-Brown D; Ay F; Straight AF; Duan Z; Noble WS; Skotheim JM
Proc Natl Acad Sci U S A; 2017 Apr; 114(15):E3061-E3070. PubMed ID: 28348222
[TBL] [Abstract][Full Text] [Related]
36. Spatial organization of the budding yeast genome in the cell nucleus and identification of specific chromatin interactions from multi-chromosome constrained chromatin model.
Gürsoy G; Xu Y; Liang J
PLoS Comput Biol; 2017 Jul; 13(7):e1005658. PubMed ID: 28704374
[TBL] [Abstract][Full Text] [Related]
37. Using the Saccharomyces Genome Database (SGD) for analysis of protein similarities and structure.
Chervitz SA; Hester ET; Ball CA; Dolinski K; Dwight SS; Harris MA; Juvik G; Malekian A; Roberts S; Roe T; Scafe C; Schroeder M; Sherlock G; Weng S; Zhu Y; Cherry JM; Botstein D
Nucleic Acids Res; 1999 Jan; 27(1):74-8. PubMed ID: 9847146
[TBL] [Abstract][Full Text] [Related]
38. PRIMED: PRIMEr database for deleting and tagging all fission and budding yeast genes developed using the open-source genome retrieval script (GRS).
Cummings MT; Joh RI; Motamedi M
PLoS One; 2015; 10(2):e0116657. PubMed ID: 25643023
[TBL] [Abstract][Full Text] [Related]
39. Expanded protein information at SGD: new pages and proteome browser.
Nash R; Weng S; Hitz B; Balakrishnan R; Christie KR; Costanzo MC; Dwight SS; Engel SR; Fisk DG; Hirschman JE; Hong EL; Livstone MS; Oughtred R; Park J; Skrzypek M; Theesfeld CL; Binkley G; Dong Q; Lane C; Miyasato S; Sethuraman A; Schroeder M; Dolinski K; Botstein D; Cherry JM
Nucleic Acids Res; 2007 Jan; 35(Database issue):D468-71. PubMed ID: 17142221
[TBL] [Abstract][Full Text] [Related]
40. Filling annotation gaps in yeast genomes using genome-wide contact maps.
Marie-Nelly H; Marbouty M; Cournac A; Liti G; Fischer G; Zimmer C; Koszul R
Bioinformatics; 2014 Aug; 30(15):2105-13. PubMed ID: 24711652
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]