208 related articles for article (PubMed ID: 22435713)
1. Codon Deviation Coefficient: a novel measure for estimating codon usage bias and its statistical significance.
Zhang Z; Li J; Cui P; Ding F; Li A; Townsend JP; Yu J
BMC Bioinformatics; 2012 Mar; 13():43. PubMed ID: 22435713
[TBL] [Abstract][Full Text] [Related]
2. Estimating Gene Expression and Codon-Specific Translational Efficiencies, Mutation Biases, and Selection Coefficients from Genomic Data Alone.
Gilchrist MA; Chen WC; Shah P; Landerer CL; Zaretzki R
Genome Biol Evol; 2015 May; 7(6):1559-79. PubMed ID: 25977456
[TBL] [Abstract][Full Text] [Related]
3. Constraint on di-nucleotides by codon usage bias in bacterial genomes.
Satapathy SS; Powdel BR; Dutta M; Buragohain AK; Ray SK
Gene; 2014 Feb; 536(1):18-28. PubMed ID: 24333347
[TBL] [Abstract][Full Text] [Related]
4. Preference of A/T ending codons in mitochondrial ATP6 gene under phylum Platyhelminthes: Codon usage of ATP6 gene in Platyhelminthes.
Mazumder GA; Uddin A; Chakraborty S
Mol Biochem Parasitol; 2018 Oct; 225():15-26. PubMed ID: 30149040
[TBL] [Abstract][Full Text] [Related]
5. Quantifying shifts in natural selection on codon usage between protein regions: a population genetics approach.
Cope AL; Gilchrist MA
BMC Genomics; 2022 May; 23(1):408. PubMed ID: 35637464
[TBL] [Abstract][Full Text] [Related]
6. Explaining complex codon usage patterns with selection for translational efficiency, mutation bias, and genetic drift.
Shah P; Gilchrist MA
Proc Natl Acad Sci U S A; 2011 Jun; 108(25):10231-6. PubMed ID: 21646514
[TBL] [Abstract][Full Text] [Related]
7. Evolution of Codon Usage Bias in Diatoms.
Krasovec M; Filatov DA
Genes (Basel); 2019 Nov; 10(11):. PubMed ID: 31698749
[TBL] [Abstract][Full Text] [Related]
8. Translational Selection for Speed Is Not Sufficient to Explain Variation in Bacterial Codon Usage Bias.
Mahajan S; Agashe D
Genome Biol Evol; 2018 Feb; 10(2):562-576. PubMed ID: 29385509
[TBL] [Abstract][Full Text] [Related]
9. scnRCA: a novel method to detect consistent patterns of translational selection in mutationally-biased genomes.
O'Neill PK; Or M; Erill I
PLoS One; 2013; 8(10):e76177. PubMed ID: 24116094
[TBL] [Abstract][Full Text] [Related]
10. Accounting for Programmed Ribosomal Frameshifting in the Computation of Codon Usage Bias Indices.
Garcia V; Zoller S; Anisimova M
G3 (Bethesda); 2018 Oct; 8(10):3173-3183. PubMed ID: 30111621
[TBL] [Abstract][Full Text] [Related]
11. Patterns of codon usage bias in Silene latifolia.
Qiu S; Bergero R; Zeng K; Charlesworth D
Mol Biol Evol; 2011 Jan; 28(1):771-80. PubMed ID: 20855431
[TBL] [Abstract][Full Text] [Related]
12. Genome-wide codon usage profiling of ocular infective Chlamydia trachomatis serovars and drug target identification.
Sadhasivam A; Vetrivel U
J Biomol Struct Dyn; 2018 Jun; 36(8):1979-2003. PubMed ID: 28627970
[TBL] [Abstract][Full Text] [Related]
13. Comparative Analysis of Codon Bias in the Chloroplast Genomes of Theaceae Species.
Wang Z; Cai Q; Wang Y; Li M; Wang C; Wang Z; Jiao C; Xu C; Wang H; Zhang Z
Front Genet; 2022; 13():824610. PubMed ID: 35360853
[TBL] [Abstract][Full Text] [Related]
14. Understanding the codon usage patterns of mitochondrial CO genes among Amphibians.
Barbhuiya PA; Uddin A; Chakraborty S
Gene; 2021 Apr; 777():145462. PubMed ID: 33515725
[TBL] [Abstract][Full Text] [Related]
15. Factors affecting synonymous codon usage of housekeeping genes in Drosophila melanogaster.
Lu YW; Chiu TS
Acta Biol Hung; 2018 Mar; 69(1):58-71. PubMed ID: 29575916
[TBL] [Abstract][Full Text] [Related]
16. Inferring Adaptive Codon Preference to Understand Sources of Selection Shaping Codon Usage Bias.
de Oliveira JL; Morales AC; Hurst LD; Urrutia AO; Thompson CRL; Wolf JB
Mol Biol Evol; 2021 Jul; 38(8):3247-3266. PubMed ID: 33871580
[TBL] [Abstract][Full Text] [Related]
17. Codon usage in twelve species of Drosophila.
Vicario S; Moriyama EN; Powell JR
BMC Evol Biol; 2007 Nov; 7():226. PubMed ID: 18005411
[TBL] [Abstract][Full Text] [Related]
18. Codon Usage Selection Can Bias Estimation of the Fraction of Adaptive Amino Acid Fixations.
Matsumoto T; John A; Baeza-Centurion P; Li B; Akashi H
Mol Biol Evol; 2016 Jun; 33(6):1580-9. PubMed ID: 26873577
[TBL] [Abstract][Full Text] [Related]
19. Does codon bias have an evolutionary origin?
Biro JC
Theor Biol Med Model; 2008 Jul; 5():16. PubMed ID: 18667081
[TBL] [Abstract][Full Text] [Related]
20. Analysis of synonymous codon usage pattern of genes in unique non-blood-sucking leech Whitmania pigra.
Khan MS; Guan DL; Ma LB; Xie JY; Xu SQ
J Cell Biochem; 2019 Jun; 120(6):9850-9858. PubMed ID: 30681200
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]