These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

272 related articles for article (PubMed ID: 22439878)

  • 1. The fine-scale architecture of structural variants in 17 mouse genomes.
    Yalcin B; Wong K; Bhomra A; Goodson M; Keane TM; Adams DJ; Flint J
    Genome Biol; 2012; 13(3):R18. PubMed ID: 22439878
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Genome-wide mapping and assembly of structural variant breakpoints in the mouse genome.
    Quinlan AR; Clark RA; Sokolova S; Leibowitz ML; Zhang Y; Hurles ME; Mell JC; Hall IM
    Genome Res; 2010 May; 20(5):623-35. PubMed ID: 20308636
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Sequence-based characterization of structural variation in the mouse genome.
    Yalcin B; Wong K; Agam A; Goodson M; Keane TM; Gan X; Nellåker C; Goodstadt L; Nicod J; Bhomra A; Hernandez-Pliego P; Whitley H; Cleak J; Dutton R; Janowitz D; Mott R; Adams DJ; Flint J
    Nature; 2011 Sep; 477(7364):326-9. PubMed ID: 21921916
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Mapping copy number variation by population-scale genome sequencing.
    Mills RE; Walter K; Stewart C; Handsaker RE; Chen K; Alkan C; Abyzov A; Yoon SC; Ye K; Cheetham RK; Chinwalla A; Conrad DF; Fu Y; Grubert F; Hajirasouliha I; Hormozdiari F; Iakoucheva LM; Iqbal Z; Kang S; Kidd JM; Konkel MK; Korn J; Khurana E; Kural D; Lam HY; Leng J; Li R; Li Y; Lin CY; Luo R; Mu XJ; Nemesh J; Peckham HE; Rausch T; Scally A; Shi X; Stromberg MP; Stütz AM; Urban AE; Walker JA; Wu J; Zhang Y; Zhang ZD; Batzer MA; Ding L; Marth GT; McVean G; Sebat J; Snyder M; Wang J; Ye K; Eichler EE; Gerstein MB; Hurles ME; Lee C; McCarroll SA; Korbel JO;
    Nature; 2011 Feb; 470(7332):59-65. PubMed ID: 21293372
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Paired-end mapping reveals extensive structural variation in the human genome.
    Korbel JO; Urban AE; Affourtit JP; Godwin B; Grubert F; Simons JF; Kim PM; Palejev D; Carriero NJ; Du L; Taillon BE; Chen Z; Tanzer A; Saunders AC; Chi J; Yang F; Carter NP; Hurles ME; Weissman SM; Harkins TT; Gerstein MB; Egholm M; Snyder M
    Science; 2007 Oct; 318(5849):420-6. PubMed ID: 17901297
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Next-generation mapping: a novel approach for detection of pathogenic structural variants with a potential utility in clinical diagnosis.
    Barseghyan H; Tang W; Wang RT; Almalvez M; Segura E; Bramble MS; Lipson A; Douine ED; Lee H; Délot EC; Nelson SF; Vilain E
    Genome Med; 2017 Oct; 9(1):90. PubMed ID: 29070057
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Precise detection of chromosomal translocation or inversion breakpoints by whole-genome sequencing.
    Suzuki T; Tsurusaki Y; Nakashima M; Miyake N; Saitsu H; Takeda S; Matsumoto N
    J Hum Genet; 2014 Dec; 59(12):649-54. PubMed ID: 25296578
    [TBL] [Abstract][Full Text] [Related]  

  • 8. High-resolution structural variants catalogue in a large-scale whole genome sequenced bovine family cohort data.
    Lee YL; Bosse M; Takeda H; Moreira GCM; Karim L; Druet T; Oget-Ebrad C; Coppieters W; Veerkamp RF; Groenen MAM; Georges M; Bouwman AC; Charlier C
    BMC Genomics; 2023 May; 24(1):225. PubMed ID: 37127590
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Structural variation in two human genomes mapped at single-nucleotide resolution by whole genome de novo assembly.
    Li Y; Zheng H; Luo R; Wu H; Zhu H; Li R; Cao H; Wu B; Huang S; Shao H; Ma H; Zhang F; Feng S; Zhang W; Du H; Tian G; Li J; Zhang X; Li S; Bolund L; Kristiansen K; de Smith AJ; Blakemore AI; Coin LJ; Yang H; Wang J; Wang J
    Nat Biotechnol; 2011 Jul; 29(8):723-30. PubMed ID: 21785424
    [TBL] [Abstract][Full Text] [Related]  

  • 10. PRISM: pair-read informed split-read mapping for base-pair level detection of insertion, deletion and structural variants.
    Jiang Y; Wang Y; Brudno M
    Bioinformatics; 2012 Oct; 28(20):2576-83. PubMed ID: 22851530
    [TBL] [Abstract][Full Text] [Related]  

  • 11. svclassify: a method to establish benchmark structural variant calls.
    Parikh H; Mohiyuddin M; Lam HY; Iyer H; Chen D; Pratt M; Bartha G; Spies N; Losert W; Zook JM; Salit M
    BMC Genomics; 2016 Jan; 17():64. PubMed ID: 26772178
    [TBL] [Abstract][Full Text] [Related]  

  • 12. An integrative probabilistic model for identification of structural variation in sequencing data.
    Sindi SS; Onal S; Peng LC; Wu HT; Raphael BJ
    Genome Biol; 2012; 13(3):R22. PubMed ID: 22452995
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Robust and exact structural variation detection with paired-end and soft-clipped alignments: SoftSV compared with eight algorithms.
    Bartenhagen C; Dugas M
    Brief Bioinform; 2016 Jan; 17(1):51-62. PubMed ID: 25998133
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Identification of genomic indels and structural variations using split reads.
    Zhang ZD; Du J; Lam H; Abyzov A; Urban AE; Snyder M; Gerstein M
    BMC Genomics; 2011 Jul; 12():375. PubMed ID: 21787423
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Multiplex structural variant detection by whole-genome mapping and nanopore sequencing.
    Uppuluri L; Wang Y; Young E; Wong JS; Abid HZ; Xiao M
    Sci Rep; 2022 Apr; 12(1):6512. PubMed ID: 35444207
    [TBL] [Abstract][Full Text] [Related]  

  • 16. MetaSV: an accurate and integrative structural-variant caller for next generation sequencing.
    Mohiyuddin M; Mu JC; Li J; Bani Asadi N; Gerstein MB; Abyzov A; Wong WH; Lam HY
    Bioinformatics; 2015 Aug; 31(16):2741-4. PubMed ID: 25861968
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Small polymorphisms are a source of ancestral bias in structural variant breakpoint placement.
    Audano PA; Beck CR
    Genome Res; 2024 Feb; 34(1):7-19. PubMed ID: 38176712
    [TBL] [Abstract][Full Text] [Related]  

  • 18. SvABA: genome-wide detection of structural variants and indels by local assembly.
    Wala JA; Bandopadhayay P; Greenwald NF; O'Rourke R; Sharpe T; Stewart C; Schumacher S; Li Y; Weischenfeldt J; Yao X; Nusbaum C; Campbell P; Getz G; Meyerson M; Zhang CZ; Imielinski M; Beroukhim R
    Genome Res; 2018 Apr; 28(4):581-591. PubMed ID: 29535149
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Structural Variant Detection by Large-scale Sequencing Reveals New Evolutionary Evidence on Breed Divergence between Chinese and European Pigs.
    Zhao P; Li J; Kang H; Wang H; Fan Z; Yin Z; Wang J; Zhang Q; Wang Z; Liu JF
    Sci Rep; 2016 Jan; 6():18501. PubMed ID: 26729041
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Nucleotide-resolution analysis of structural variants using BreakSeq and a breakpoint library.
    Lam HY; Mu XJ; Stütz AM; Tanzer A; Cayting PD; Snyder M; Kim PM; Korbel JO; Gerstein MB
    Nat Biotechnol; 2010 Jan; 28(1):47-55. PubMed ID: 20037582
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 14.