These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

336 related articles for article (PubMed ID: 22446687)

  • 1. Comparative proteomics reveals a significant bias toward alternative protein isoforms with conserved structure and function.
    Ezkurdia I; del Pozo A; Frankish A; Rodriguez JM; Harrow J; Ashman K; Valencia A; Tress ML
    Mol Biol Evol; 2012 Sep; 29(9):2265-83. PubMed ID: 22446687
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Alternatively Spliced Homologous Exons Have Ancient Origins and Are Highly Expressed at the Protein Level.
    Abascal F; Ezkurdia I; Rodriguez-Rivas J; Rodriguez JM; del Pozo A; Vázquez J; Valencia A; Tress ML
    PLoS Comput Biol; 2015 Jun; 11(6):e1004325. PubMed ID: 26061177
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Large Scale Profiling of Protein Isoforms Using Label-Free Quantitative Proteomics Revealed the Regulation of Nonsense-Mediated Decay in Moso Bamboo (
    Yu X; Wang Y; Kohnen MV; Piao M; Tu M; Gao Y; Lin C; Zuo Z; Gu L
    Cells; 2019 Jul; 8(7):. PubMed ID: 31330982
    [TBL] [Abstract][Full Text] [Related]  

  • 4. PEPPI: a peptidomic database of human protein isoforms for proteomics experiments.
    Zhou A; Zhang F; Chen JY
    BMC Bioinformatics; 2010 Oct; 11 Suppl 6(Suppl 6):S7. PubMed ID: 20946618
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Shotgun proteomics aids discovery of novel protein-coding genes, alternative splicing, and "resurrected" pseudogenes in the mouse genome.
    Brosch M; Saunders GI; Frankish A; Collins MO; Yu L; Wright J; Verstraten R; Adams DJ; Harrow J; Choudhary JS; Hubbard T
    Genome Res; 2011 May; 21(5):756-67. PubMed ID: 21460061
    [TBL] [Abstract][Full Text] [Related]  

  • 6. SASD: the Synthetic Alternative Splicing Database for identifying novel isoform from proteomics.
    Zhang F; Drabier R
    BMC Bioinformatics; 2013; 14 Suppl 14(Suppl 14):S13. PubMed ID: 24267658
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Deep sequencing of pre-translational mRNPs reveals hidden flux through evolutionarily conserved alternative splicing nonsense-mediated decay pathways.
    Kovalak C; Donovan S; Bicknell AA; Metkar M; Moore MJ
    Genome Biol; 2021 May; 22(1):132. PubMed ID: 33941243
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Identifying genes with conserved splicing structure and orthologous isoforms in human, mouse and dog.
    Guillaudeux N; Belleannée C; Blanquart S
    BMC Genomics; 2022 Mar; 23(1):216. PubMed ID: 35303798
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Alternative Splicing May Not Be the Key to Proteome Complexity.
    Tress ML; Abascal F; Valencia A
    Trends Biochem Sci; 2017 Feb; 42(2):98-110. PubMed ID: 27712956
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Structural genomics analysis of alternative splicing and application to isoform structure modeling.
    Wang P; Yan B; Guo JT; Hicks C; Xu Y
    Proc Natl Acad Sci U S A; 2005 Dec; 102(52):18920-5. PubMed ID: 16354838
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Genome-wide mapping of alternative splicing in Arabidopsis thaliana.
    Filichkin SA; Priest HD; Givan SA; Shen R; Bryant DW; Fox SE; Wong WK; Mockler TC
    Genome Res; 2010 Jan; 20(1):45-58. PubMed ID: 19858364
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Proteogenomics Integrating Novel Junction Peptide Identification Strategy Discovers Three Novel Protein Isoforms of Human NHSL1 and EEF1B2.
    He C; Guo J; Tian W; Wong CCL
    J Proteome Res; 2021 Dec; 20(12):5294-5303. PubMed ID: 34420305
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Proteomics studies confirm the presence of alternative protein isoforms on a large scale.
    Tress ML; Bodenmiller B; Aebersold R; Valencia A
    Genome Biol; 2008; 9(11):R162. PubMed ID: 19017398
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Discovery of novel genes and gene isoforms by integrating transcriptomic and proteomic profiling from mouse liver.
    Wu P; Zhang H; Lin W; Hao Y; Ren L; Zhang C; Li N; Wei H; Jiang Y; He F
    J Proteome Res; 2014 May; 13(5):2409-19. PubMed ID: 24717071
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Comparison of GENCODE and RefSeq gene annotation and the impact of reference geneset on variant effect prediction.
    Frankish A; Uszczynska B; Ritchie GR; Gonzalez JM; Pervouchine D; Petryszak R; Mudge JM; Fonseca N; Brazma A; Guigo R; Harrow J
    BMC Genomics; 2015; 16 Suppl 8(Suppl 8):S2. PubMed ID: 26110515
    [TBL] [Abstract][Full Text] [Related]  

  • 16. SplicedFamAlign: CDS-to-gene spliced alignment and identification of transcript orthology groups.
    Jammali S; Aguilar JD; Kuitche E; Ouangraoua A
    BMC Bioinformatics; 2019 Mar; 20(Suppl 3):133. PubMed ID: 30925859
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Improving gene annotation using peptide mass spectrometry.
    Tanner S; Shen Z; Ng J; Florea L; Guigó R; Briggs SP; Bafna V
    Genome Res; 2007 Feb; 17(2):231-9. PubMed ID: 17189379
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Splice variants of the human ZC3H14 gene generate multiple isoforms of a zinc finger polyadenosine RNA binding protein.
    Leung SW; Apponi LH; Cornejo OE; Kitchen CM; Valentini SR; Pavlath GK; Dunham CM; Corbett AH
    Gene; 2009 Jun; 439(1-2):71-8. PubMed ID: 19303045
    [TBL] [Abstract][Full Text] [Related]  

  • 19. [Analysis, identification and correction of some errors of model refseqs appeared in NCBI Human Gene Database by in silico cloning and experimental verification of novel human genes].
    Zhang DL; Ji L; Li YD
    Yi Chuan Xue Bao; 2004 May; 31(5):431-43. PubMed ID: 15478601
    [TBL] [Abstract][Full Text] [Related]  

  • 20. A novel gene encoding a putative transmembrane protein with two extracellular CUB domains and a low-density lipoprotein class A module: isolation of alternatively spliced isoforms in retina and brain.
    Stöhr H; Berger C; Fröhlich S; Weber BH
    Gene; 2002 Mar; 286(2):223-31. PubMed ID: 11943477
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 17.