These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
264 related articles for article (PubMed ID: 22451269)
1. CpGassoc: an R function for analysis of DNA methylation microarray data. Barfield RT; Kilaru V; Smith AK; Conneely KN Bioinformatics; 2012 May; 28(9):1280-1. PubMed ID: 22451269 [TBL] [Abstract][Full Text] [Related]
2. MethLAB: a graphical user interface package for the analysis of array-based DNA methylation data. Kilaru V; Barfield RT; Schroeder JW; Smith AK; Conneely KN Epigenetics; 2012 Mar; 7(3):225-9. PubMed ID: 22430798 [TBL] [Abstract][Full Text] [Related]
3. IMA: an R package for high-throughput analysis of Illumina's 450K Infinium methylation data. Wang D; Yan L; Hu Q; Sucheston LE; Higgins MJ; Ambrosone CB; Johnson CS; Smiraglia DJ; Liu S Bioinformatics; 2012 Mar; 28(5):729-30. PubMed ID: 22253290 [TBL] [Abstract][Full Text] [Related]
4. pETM: a penalized Exponential Tilt Model for analysis of correlated high-dimensional DNA methylation data. Sun H; Wang Y; Chen Y; Li Y; Wang S Bioinformatics; 2017 Jun; 33(12):1765-1772. PubMed ID: 28165116 [TBL] [Abstract][Full Text] [Related]
5. CopyNumber450kCancer: baseline correction for accurate copy number calling from the 450k methylation array. Marzouka NA; Nordlund J; Bäcklin CL; Lönnerholm G; Syvänen AC; Carlsson Almlöf J Bioinformatics; 2016 Apr; 32(7):1080-2. PubMed ID: 26553913 [TBL] [Abstract][Full Text] [Related]
6. missMethyl: an R package for analyzing data from Illumina's HumanMethylation450 platform. Phipson B; Maksimovic J; Oshlack A Bioinformatics; 2016 Jan; 32(2):286-8. PubMed ID: 26424855 [TBL] [Abstract][Full Text] [Related]
7. Differential methylation hybridization: profiling DNA methylation with a high-density CpG island microarray. Yan PS; Potter D; Deatherage DE; Huang TH; Lin S Methods Mol Biol; 2009; 507():89-106. PubMed ID: 18987809 [TBL] [Abstract][Full Text] [Related]
8. Accounting for tumor purity improves cancer subtype classification from DNA methylation data. Zhang W; Feng H; Wu H; Zheng X Bioinformatics; 2017 Sep; 33(17):2651-2657. PubMed ID: 28472248 [TBL] [Abstract][Full Text] [Related]
9. Improved filtering of DNA methylation microarray data by detection p values and its impact on downstream analyses. Heiss JA; Just AC Clin Epigenetics; 2019 Jan; 11(1):15. PubMed ID: 30678737 [TBL] [Abstract][Full Text] [Related]
10. ParaSAM: a parallelized version of the significance analysis of microarrays algorithm. Sharma A; Zhao J; Podolsky R; McIndoe RA Bioinformatics; 2010 Jun; 26(11):1465-7. PubMed ID: 20400455 [TBL] [Abstract][Full Text] [Related]
11. Identifying mislabeled and contaminated DNA methylation microarray data: an extended quality control toolset with examples from GEO. Heiss JA; Just AC Clin Epigenetics; 2018; 10():73. PubMed ID: 29881472 [TBL] [Abstract][Full Text] [Related]
12. Assessing statistical significance in microarray experiments using the distance between microarrays. Hayden D; Lazar P; Schoenfeld D; PLoS One; 2009 Jun; 4(6):e5838. PubMed ID: 19529777 [TBL] [Abstract][Full Text] [Related]
13. Methylation detection oligonucleotide microarray analysis: a high-resolution method for detection of CpG island methylation. Kamalakaran S; Kendall J; Zhao X; Tang C; Khan S; Ravi K; Auletta T; Riggs M; Wang Y; Helland A; Naume B; Dimitrova N; Børresen-Dale AL; Hicks J; Lucito R Nucleic Acids Res; 2009 Jul; 37(12):e89. PubMed ID: 19474344 [TBL] [Abstract][Full Text] [Related]
14. The gputools package enables GPU computing in R. Buckner J; Wilson J; Seligman M; Athey B; Watson S; Meng F Bioinformatics; 2010 Jan; 26(1):134-5. PubMed ID: 19850754 [TBL] [Abstract][Full Text] [Related]
15. Methylation-specific oligonucleotide microarray: a new potential for high-throughput methylation analysis. Gitan RS; Shi H; Chen CM; Yan PS; Huang TH Genome Res; 2002 Jan; 12(1):158-64. PubMed ID: 11779841 [TBL] [Abstract][Full Text] [Related]
16. Preprocessing, normalization and integration of the Illumina HumanMethylationEPIC array with minfi. Fortin JP; Triche TJ; Hansen KD Bioinformatics; 2017 Feb; 33(4):558-560. PubMed ID: 28035024 [TBL] [Abstract][Full Text] [Related]
17. Two-part permutation tests for DNA methylation and microarray data. Neuhäuser M; Boes T; Jöckel KH BMC Bioinformatics; 2005 Feb; 6():35. PubMed ID: 15725357 [TBL] [Abstract][Full Text] [Related]
18. GLINT: a user-friendly toolset for the analysis of high-throughput DNA-methylation array data. Rahmani E; Yedidim R; Shenhav L; Schweiger R; Weissbrod O; Zaitlen N; Halperin E Bioinformatics; 2017 Jun; 33(12):1870-1872. PubMed ID: 28177067 [TBL] [Abstract][Full Text] [Related]
19. Repitools: an R package for the analysis of enrichment-based epigenomic data. Statham AL; Strbenac D; Coolen MW; Stirzaker C; Clark SJ; Robinson MD Bioinformatics; 2010 Jul; 26(13):1662-3. PubMed ID: 20457667 [TBL] [Abstract][Full Text] [Related]
20. Monitoring methylation changes in cancer. Beier V; Mund C; Hoheisel JD Adv Biochem Eng Biotechnol; 2007; 104():1-11. PubMed ID: 17290816 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]