These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

198 related articles for article (PubMed ID: 22455930)

  • 21. Inclusion of many-body effects in the additive CHARMM protein CMAP potential results in enhanced cooperativity of α-helix and β-hairpin formation.
    Best RB; Mittal J; Feig M; MacKerell AD
    Biophys J; 2012 Sep; 103(5):1045-51. PubMed ID: 23009854
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Conformational properties of a peptide model for unfolded alpha-helices.
    Firestine AM; Chellgren VM; Rucker SJ; Lester TE; Creamer TP
    Biochemistry; 2008 Mar; 47(10):3216-24. PubMed ID: 18266321
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Polarization of intraprotein hydrogen bond is critical to thermal stability of short helix.
    Gao Y; Lu X; Duan LL; Zhang JZ; Mei Y
    J Phys Chem B; 2012 Jan; 116(1):549-54. PubMed ID: 22126129
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Force Field Effects in Simulations of Flexible Peptides with Varying Polyproline II Propensity.
    Jephthah S; Pesce F; Lindorff-Larsen K; Skepö M
    J Chem Theory Comput; 2021 Oct; 17(10):6634-6646. PubMed ID: 34524800
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Residual structure in unfolded proteins revealed by Raman optical activity.
    Wilson G; Hecht L; Barron LD
    Biochemistry; 1996 Sep; 35(38):12518-25. PubMed ID: 8823188
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Molecular dynamics simulations of the folding of poly(alanine) peptides.
    Palenčár P; Bleha T
    J Mol Model; 2011 Sep; 17(9):2367-74. PubMed ID: 21360173
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Residue-specific force field based on the protein coil library. RSFF1: modification of OPLS-AA/L.
    Jiang F; Zhou CY; Wu YD
    J Phys Chem B; 2014 Jun; 118(25):6983-98. PubMed ID: 24815738
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Helix propensities of the amino acids measured in alanine-based peptides without helix-stabilizing side-chain interactions.
    Chakrabartty A; Kortemme T; Baldwin RL
    Protein Sci; 1994 May; 3(5):843-52. PubMed ID: 8061613
    [TBL] [Abstract][Full Text] [Related]  

  • 29. An Updated Test of AMBER Force Fields and Implicit Solvent Models in Predicting the Secondary Structure of Helical, β-Hairpin, and Intrinsically Disordered Peptides.
    Maffucci I; Contini A
    J Chem Theory Comput; 2016 Feb; 12(2):714-27. PubMed ID: 26784558
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Exploratory studies of ab initio protein structure prediction: multiple copy simulated annealing, AMBER energy functions, and a generalized born/solvent accessibility solvation model.
    Liu Y; Beveridge DL
    Proteins; 2002 Jan; 46(1):128-46. PubMed ID: 11746709
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Correct folding of an α-helix and a β-hairpin using a polarized 2D torsional potential.
    Gao Y; Li Y; Mou L; Lin B; Zhang JZ; Mei Y
    Sci Rep; 2015 Jun; 5():10359. PubMed ID: 26039188
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Hydrophobic interactions at the Ccap position of the C-capping motif of alpha-helices.
    Ermolenko DN; Thomas ST; Aurora R; Gronenborn AM; Makhatadze GI
    J Mol Biol; 2002 Sep; 322(1):123-35. PubMed ID: 12215419
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Propensities of Amino Acid Pairings in Secondary Structure of Globular Proteins.
    Nacar C
    Protein J; 2020 Feb; 39(1):21-32. PubMed ID: 31933010
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Folding dynamics of the Trp-cage miniprotein: evidence for a native-like intermediate from combined time-resolved vibrational spectroscopy and molecular dynamics simulations.
    Meuzelaar H; Marino KA; Huerta-Viga A; Panman MR; Smeenk LE; Kettelarij AJ; van Maarseveen JH; Timmerman P; Bolhuis PG; Woutersen S
    J Phys Chem B; 2013 Oct; 117(39):11490-501. PubMed ID: 24050152
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Conformational Dynamics of Two Natively Unfolded Fragment Peptides: Comparison of the AMBER and CHARMM Force Fields.
    Chen W; Shi C; MacKerell AD; Shen J
    J Phys Chem B; 2015 Jun; 119(25):7902-10. PubMed ID: 26020564
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Revised Backbone-Virtual-Bond-Angle Potentials to Treat the l- and d-Amino Acid Residues in the Coarse-Grained United Residue (UNRES) Force Field.
    Sieradzan AK; Niadzvedtski A; Scheraga HA; Liwo A
    J Chem Theory Comput; 2014 May; 10(5):2194-2203. PubMed ID: 24839411
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Contact pair dynamics during folding of two small proteins: chicken villin head piece and the Alzheimer protein beta-amyloid.
    Mukherjee A; Bagchi B
    J Chem Phys; 2004 Jan; 120(3):1602-12. PubMed ID: 15268287
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Amino acid propensities for the collagen triple-helix.
    Persikov AV; Ramshaw JA; Kirkpatrick A; Brodsky B
    Biochemistry; 2000 Dec; 39(48):14960-7. PubMed ID: 11101312
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Derivation of fixed partial charges for amino acids accommodating a specific water model and implicit polarization.
    Cerutti DS; Rice JE; Swope WC; Case DA
    J Phys Chem B; 2013 Feb; 117(8):2328-38. PubMed ID: 23379664
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Insights into the folding pathway of the Engrailed Homeodomain protein using replica exchange molecular dynamics simulations.
    Koulgi S; Sonavane U; Joshi R
    J Mol Graph Model; 2010 Nov; 29(3):481-91. PubMed ID: 21035367
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 10.