These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

195 related articles for article (PubMed ID: 22488669)

  • 1. A protein-RNA docking benchmark (I): nonredundant cases.
    Barik A; C N; P M; Bahadur RP
    Proteins; 2012 Jul; 80(7):1866-71. PubMed ID: 22488669
    [TBL] [Abstract][Full Text] [Related]  

  • 2. A protein-RNA docking benchmark (II): extended set from experimental and homology modeling data.
    Pérez-Cano L; Jiménez-García B; Fernández-Recio J
    Proteins; 2012 Jul; 80(7):1872-82. PubMed ID: 22488990
    [TBL] [Abstract][Full Text] [Related]  

  • 3. A non-redundant protein-RNA docking benchmark version 2.0.
    Nithin C; Mukherjee S; Bahadur RP
    Proteins; 2017 Feb; 85(2):256-267. PubMed ID: 27862282
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Protein-Protein Docking Benchmark 2.0: an update.
    Mintseris J; Wiehe K; Pierce B; Anderson R; Chen R; Janin J; Weng Z
    Proteins; 2005 Aug; 60(2):214-6. PubMed ID: 15981264
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Evaluating conformational changes in protein structures binding RNA.
    Ellis JJ; Jones S
    Proteins; 2008 Mar; 70(4):1518-26. PubMed ID: 17910059
    [TBL] [Abstract][Full Text] [Related]  

  • 6. A nonredundant structure dataset for benchmarking protein-RNA computational docking.
    Huang SY; Zou X
    J Comput Chem; 2013 Feb; 34(4):311-8. PubMed ID: 23047523
    [TBL] [Abstract][Full Text] [Related]  

  • 7. RRDB: a comprehensive and non-redundant benchmark for RNA-RNA docking and scoring.
    Yan Y; Huang SY
    Bioinformatics; 2018 Feb; 34(3):453-458. PubMed ID: 29028888
    [TBL] [Abstract][Full Text] [Related]  

  • 8. DOCKGROUND system of databases for protein recognition studies: unbound structures for docking.
    Gao Y; Douguet D; Tovchigrechko A; Vakser IA
    Proteins; 2007 Dec; 69(4):845-51. PubMed ID: 17803215
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Optimal protein-RNA area, OPRA: a propensity-based method to identify RNA-binding sites on proteins.
    Pérez-Cano L; Fernández-Recio J
    Proteins; 2010 Jan; 78(1):25-35. PubMed ID: 19714772
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Structure-based analysis of protein-RNA interactions using the program ENTANGLE.
    Allers J; Shamoo Y
    J Mol Biol; 2001 Aug; 311(1):75-86. PubMed ID: 11469858
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Geometric similarity between protein-RNA interfaces.
    Zhou P; Zou J; Tian F; Shang Z
    J Comput Chem; 2009 Dec; 30(16):2738-51. PubMed ID: 19399760
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Strengths and weaknesses of data-driven docking in critical assessment of prediction of interactions.
    de Vries SJ; Melquiond AS; Kastritis PL; Karaca E; Bordogna A; van Dijk M; Rodrigues JP; Bonvin AM
    Proteins; 2010 Nov; 78(15):3242-9. PubMed ID: 20718048
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Optimization of pyDock for the new CAPRI challenges: Docking of homology-based models, domain-domain assembly and protein-RNA binding.
    Pons C; Solernou A; Perez-Cano L; Grosdidier S; Fernandez-Recio J
    Proteins; 2010 Nov; 78(15):3182-8. PubMed ID: 20602351
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Protein-RNA interactions: exploring binding patterns with a three-dimensional superposition analysis of high resolution structures.
    Morozova N; Allers J; Myers J; Shamoo Y
    Bioinformatics; 2006 Nov; 22(22):2746-52. PubMed ID: 16966360
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Development and testing of an automated approach to protein docking.
    Tovchigrechko A; Vakser IA
    Proteins; 2005 Aug; 60(2):296-301. PubMed ID: 15981259
    [TBL] [Abstract][Full Text] [Related]  

  • 16. BIPA: a database for protein-nucleic acid interaction in 3D structures.
    Lee S; Blundell TL
    Bioinformatics; 2009 Jun; 25(12):1559-60. PubMed ID: 19357098
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Structure and thermodynamics of RNA-protein binding: using molecular dynamics and free energy analyses to calculate the free energies of binding and conformational change.
    Reyes CM; Kollman PA
    J Mol Biol; 2000 Apr; 297(5):1145-58. PubMed ID: 10764579
    [TBL] [Abstract][Full Text] [Related]  

  • 18. A structure-based model for the prediction of protein-RNA binding affinity.
    Nithin C; Mukherjee S; Bahadur RP
    RNA; 2019 Dec; 25(12):1628-1645. PubMed ID: 31395671
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Computational methods for prediction of protein-RNA interactions.
    Puton T; Kozlowski L; Tuszynska I; Rother K; Bujnicki JM
    J Struct Biol; 2012 Sep; 179(3):261-8. PubMed ID: 22019768
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Docking and scoring protein complexes: CAPRI 3rd Edition.
    Lensink MF; Méndez R; Wodak SJ
    Proteins; 2007 Dec; 69(4):704-18. PubMed ID: 17918726
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.