These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

155 related articles for article (PubMed ID: 22496776)

  • 1. Fast and accurate taxonomic assignments of metagenomic sequences using MetaBin.
    Sharma VK; Kumar N; Prakash T; Taylor TD
    PLoS One; 2012; 7(4):e34030. PubMed ID: 22496776
    [TBL] [Abstract][Full Text] [Related]  

  • 2. INDUS - a composition-based approach for rapid and accurate taxonomic classification of metagenomic sequences.
    Mohammed MH; Ghosh TS; Reddy RM; Reddy CV; Singh NK; Mande SS
    BMC Genomics; 2011 Nov; 12 Suppl 3(Suppl 3):S4. PubMed ID: 22369237
    [TBL] [Abstract][Full Text] [Related]  

  • 3. MEGAN-LR: new algorithms allow accurate binning and easy interactive exploration of metagenomic long reads and contigs.
    Huson DH; Albrecht B; Bağcı C; Bessarab I; Górska A; Jolic D; Williams RBH
    Biol Direct; 2018 Apr; 13(1):6. PubMed ID: 29678199
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Rapid identification of high-confidence taxonomic assignments for metagenomic data.
    MacDonald NJ; Parks DH; Beiko RG
    Nucleic Acids Res; 2012 Aug; 40(14):e111. PubMed ID: 22532608
    [TBL] [Abstract][Full Text] [Related]  

  • 5. SPHINX--an algorithm for taxonomic binning of metagenomic sequences.
    Mohammed MH; Ghosh TS; Singh NK; Mande SS
    Bioinformatics; 2011 Jan; 27(1):22-30. PubMed ID: 21030462
    [TBL] [Abstract][Full Text] [Related]  

  • 6. TWARIT: an extremely rapid and efficient approach for phylogenetic classification of metagenomic sequences.
    Reddy RM; Mohammed MH; Mande SS
    Gene; 2012 Sep; 505(2):259-65. PubMed ID: 22710135
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Binpairs: utilization of Illumina paired-end information for improving efficiency of taxonomic binning of metagenomic sequences.
    Dutta A; Tandon D; Mohammed MH; Bose T; Mande SS
    PLoS One; 2014; 9(12):e114814. PubMed ID: 25551450
    [TBL] [Abstract][Full Text] [Related]  

  • 8. A statistical framework for accurate taxonomic assignment of metagenomic sequencing reads.
    Jiang H; An L; Lin SM; Feng G; Qiu Y
    PLoS One; 2012; 7(10):e46450. PubMed ID: 23049702
    [TBL] [Abstract][Full Text] [Related]  

  • 9. WebMGA: a customizable web server for fast metagenomic sequence analysis.
    Wu S; Zhu Z; Fu L; Niu B; Li W
    BMC Genomics; 2011 Sep; 12():444. PubMed ID: 21899761
    [TBL] [Abstract][Full Text] [Related]  

  • 10. DiScRIBinATE: a rapid method for accurate taxonomic classification of metagenomic sequences.
    Ghosh TS; Monzoorul Haque M; Mande SS
    BMC Bioinformatics; 2010 Oct; 11 Suppl 7(Suppl 7):S14. PubMed ID: 21106121
    [TBL] [Abstract][Full Text] [Related]  

  • 11. SOrt-ITEMS: Sequence orthology based approach for improved taxonomic estimation of metagenomic sequences.
    Monzoorul Haque M; Ghosh TS; Komanduri D; Mande SS
    Bioinformatics; 2009 Jul; 25(14):1722-30. PubMed ID: 19439565
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Selection of marker genes for genetic barcoding of microorganisms and binning of metagenomic reads by Barcoder software tools.
    Rotimi AM; Pierneef R; Reva ON
    BMC Bioinformatics; 2018 Aug; 19(1):309. PubMed ID: 30165813
    [TBL] [Abstract][Full Text] [Related]  

  • 13. GRASPx: efficient homolog-search of short peptide metagenome database through simultaneous alignment and assembly.
    Zhong C; Yang Y; Yooseph S
    BMC Bioinformatics; 2016 Aug; 17 Suppl 8(Suppl 8):283. PubMed ID: 27585568
    [TBL] [Abstract][Full Text] [Related]  

  • 14. MBMC: An Effective Markov Chain Approach for Binning Metagenomic Reads from Environmental Shotgun Sequencing Projects.
    Wang Y; Hu H; Li X
    OMICS; 2016 Aug; 20(8):470-9. PubMed ID: 27447888
    [TBL] [Abstract][Full Text] [Related]  

  • 15. WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads.
    Gerlach W; Jünemann S; Tille F; Goesmann A; Stoye J
    BMC Bioinformatics; 2009 Dec; 10():430. PubMed ID: 20021646
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Classifying short genomic fragments from novel lineages using composition and homology.
    Parks DH; MacDonald NJ; Beiko RG
    BMC Bioinformatics; 2011 Aug; 12():328. PubMed ID: 21827705
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Accurate and fast estimation of taxonomic profiles from metagenomic shotgun sequences.
    Liu B; Gibbons T; Ghodsi M; Treangen T; Pop M
    BMC Genomics; 2011; 12 Suppl 2(Suppl 2):S4. PubMed ID: 21989143
    [TBL] [Abstract][Full Text] [Related]  

  • 18. An ORFome assembly approach to metagenomics sequences analysis.
    Ye Y; Tang H
    Comput Syst Bioinformatics Conf; 2008; 7():3-13. PubMed ID: 19642264
    [TBL] [Abstract][Full Text] [Related]  

  • 19. BLAST-based validation of metagenomic sequence assignments.
    Bazinet AL; Ondov BD; Sommer DD; Ratnayake S
    PeerJ; 2018; 6():e4892. PubMed ID: 29868286
    [TBL] [Abstract][Full Text] [Related]  

  • 20. MTSv: rapid alignment-based taxonomic classification and high-confidence metagenomic analysis.
    Furstenau TN; Schneider T; Shaffer I; Vazquez AJ; Sahl J; Fofanov V
    PeerJ; 2022; 10():e14292. PubMed ID: 36389404
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.