These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

96 related articles for article (PubMed ID: 22513994)

  • 1. TSSi--an R package for transcription start site identification from 5' mRNA tag data.
    Kreutz C; Gehring JS; Lang D; Reski R; Timmer J; Rensing SA
    Bioinformatics; 2012 Jun; 28(12):1641-2. PubMed ID: 22513994
    [TBL] [Abstract][Full Text] [Related]  

  • 2. ChIPseeker: an R/Bioconductor package for ChIP peak annotation, comparison and visualization.
    Yu G; Wang LG; He QY
    Bioinformatics; 2015 Jul; 31(14):2382-3. PubMed ID: 25765347
    [TBL] [Abstract][Full Text] [Related]  

  • 3. QuasR: quantification and annotation of short reads in R.
    Gaidatzis D; Lerch A; Hahne F; Stadler MB
    Bioinformatics; 2015 Apr; 31(7):1130-2. PubMed ID: 25417205
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Using RAMPAGE to Identify and Annotate Promoters in Insect Genomes.
    Raborn RT; Brendel VP
    Methods Mol Biol; 2019; 1858():99-116. PubMed ID: 30414114
    [TBL] [Abstract][Full Text] [Related]  

  • 5. GUIDEseq: a bioconductor package to analyze GUIDE-Seq datasets for CRISPR-Cas nucleases.
    Zhu LJ; Lawrence M; Gupta A; Pagès H; Kucukural A; Garber M; Wolfe SA
    BMC Genomics; 2017 May; 18(1):379. PubMed ID: 28506212
    [TBL] [Abstract][Full Text] [Related]  

  • 6. ATACseqQC: a Bioconductor package for post-alignment quality assessment of ATAC-seq data.
    Ou J; Liu H; Yu J; Kelliher MA; Castilla LH; Lawson ND; Zhu LJ
    BMC Genomics; 2018 Mar; 19(1):169. PubMed ID: 29490630
    [TBL] [Abstract][Full Text] [Related]  

  • 7. primirTSS: an R package for identifying cell-specific microRNA transcription start sites.
    Li P; Xu Q; Hua X; Xie Z; Li J; Wang J
    Bioinformatics; 2020 Jun; 36(11):3605-3606. PubMed ID: 32170928
    [TBL] [Abstract][Full Text] [Related]  

  • 8. A protocol for RNA methylation differential analysis with MeRIP-Seq data and exomePeak R/Bioconductor package.
    Meng J; Lu Z; Liu H; Zhang L; Zhang S; Chen Y; Rao MK; Huang Y
    Methods; 2014 Oct; 69(3):274-81. PubMed ID: 24979058
    [TBL] [Abstract][Full Text] [Related]  

  • 9. GMD: measuring the distance between histograms with applications on high-throughput sequencing reads.
    Zhao X; Sandelin A
    Bioinformatics; 2012 Apr; 28(8):1164-5. PubMed ID: 22345619
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Seq2pathway: an R/Bioconductor package for pathway analysis of next-generation sequencing data.
    Wang B; Cunningham JM; Yang XH
    Bioinformatics; 2015 Sep; 31(18):3043-5. PubMed ID: 25979472
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Identification of active miRNA promoters from nuclear run-on RNA sequencing.
    Liu Q; Wang J; Zhao Y; Li CI; Stengel KR; Acharya P; Johnston G; Hiebert SW; Shyr Y
    Nucleic Acids Res; 2017 Jul; 45(13):e121. PubMed ID: 28460090
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Girafe--an R/Bioconductor package for functional exploration of aligned next-generation sequencing reads.
    Toedling J; Ciaudo C; Voinnet O; Heard E; Barillot E
    Bioinformatics; 2010 Nov; 26(22):2902-3. PubMed ID: 20861030
    [TBL] [Abstract][Full Text] [Related]  

  • 13. CAGEfightR: analysis of 5'-end data using R/Bioconductor.
    Thodberg M; Thieffry A; Vitting-Seerup K; Andersson R; Sandelin A
    BMC Bioinformatics; 2019 Oct; 20(1):487. PubMed ID: 31585526
    [TBL] [Abstract][Full Text] [Related]  

  • 14. FindIT2: an R/Bioconductor package to identify influential transcription factor and targets based on multi-omics data.
    Shang GD; Xu ZG; Wan MC; Wang FX; Wang JW
    BMC Genomics; 2022 Apr; 23(Suppl 1):272. PubMed ID: 35392802
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Sensitive and highly resolved identification of RNA-protein interaction sites in PAR-CLIP data.
    Comoglio F; Sievers C; Paro R
    BMC Bioinformatics; 2015 Feb; 16():32. PubMed ID: 25638391
    [TBL] [Abstract][Full Text] [Related]  

  • 16. CAGEr: precise TSS data retrieval and high-resolution promoterome mining for integrative analyses.
    Haberle V; Forrest AR; Hayashizaki Y; Carninci P; Lenhard B
    Nucleic Acids Res; 2015 Apr; 43(8):e51. PubMed ID: 25653163
    [TBL] [Abstract][Full Text] [Related]  

  • 17. RNA-Seq-Based Transcript Structure Analysis with TrBorderExt.
    Wang Y; Sun MA; White AP
    Methods Mol Biol; 2018; 1751():89-99. PubMed ID: 29508291
    [TBL] [Abstract][Full Text] [Related]  

  • 18. BayesPeak--an R package for analysing ChIP-seq data.
    Cairns J; Spyrou C; Stark R; Smith ML; Lynch AG; Tavaré S
    Bioinformatics; 2011 Mar; 27(5):713-4. PubMed ID: 21245054
    [TBL] [Abstract][Full Text] [Related]  

  • 19. htSeqTools: high-throughput sequencing quality control, processing and visualization in R.
    Planet E; Attolini CS; Reina O; Flores O; Rossell D
    Bioinformatics; 2012 Feb; 28(4):589-90. PubMed ID: 22199381
    [TBL] [Abstract][Full Text] [Related]  

  • 20. compcodeR--an R package for benchmarking differential expression methods for RNA-seq data.
    Soneson C
    Bioinformatics; 2014 Sep; 30(17):2517-8. PubMed ID: 24813215
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 5.