155 related articles for article (PubMed ID: 22514012)
1. Probing riboswitch-ligand interactions using thiamine pyrophosphate analogues.
Chen L; Cressina E; Dixon N; Erixon K; Agyei-Owusu K; Micklefield J; Smith AG; Abell C; Leeper FJ
Org Biomol Chem; 2012 Aug; 10(30):5924-31. PubMed ID: 22514012
[TBL] [Abstract][Full Text] [Related]
2. Structural basis for gene regulation by a thiamine pyrophosphate-sensing riboswitch.
Serganov A; Polonskaia A; Phan AT; Breaker RR; Patel DJ
Nature; 2006 Jun; 441(7097):1167-71. PubMed ID: 16728979
[TBL] [Abstract][Full Text] [Related]
3. Single-molecule FRET studies on the cotranscriptional folding of a thiamine pyrophosphate riboswitch.
Uhm H; Kang W; Ha KS; Kang C; Hohng S
Proc Natl Acad Sci U S A; 2018 Jan; 115(2):331-336. PubMed ID: 29279370
[TBL] [Abstract][Full Text] [Related]
4. Thermodynamic analysis of ligand binding and ligand binding-induced tertiary structure formation by the thiamine pyrophosphate riboswitch.
Kulshina N; Edwards TE; Ferré-D'Amaré AR
RNA; 2010 Jan; 16(1):186-96. PubMed ID: 19948769
[TBL] [Abstract][Full Text] [Related]
5. Conformational Dynamics of thiM Riboswitch To Understand the Gene Regulation Mechanism Using Markov State Modeling and the Residual Fluctuation Network Approach.
Kesherwani M; N H V K; Velmurugan D
J Chem Inf Model; 2018 Aug; 58(8):1638-1651. PubMed ID: 29939019
[TBL] [Abstract][Full Text] [Related]
6. Unraveling the Role of π-Stacking Interactions in Ligand Binding to the Thiamine Pyrophosphate Riboswitch with High-level Quantum Chemical Calculations and Docking Study.
Wakchaure PD; Ganguly B
J Phys Chem B; 2022 Feb; 126(5):1076-1084. PubMed ID: 35089046
[TBL] [Abstract][Full Text] [Related]
7. Conformational changes in the expression domain of the Escherichia coli thiM riboswitch.
Rentmeister A; Mayer G; Kuhn N; Famulok M
Nucleic Acids Res; 2007; 35(11):3713-22. PubMed ID: 17517779
[TBL] [Abstract][Full Text] [Related]
8. Phosphate-group recognition by the aptamer domain of the thiamine pyrophosphate sensing riboswitch.
Noeske J; Richter C; Stirnal E; Schwalbe H; Wöhnert J
Chembiochem; 2006 Sep; 7(9):1451-6. PubMed ID: 16871614
[TBL] [Abstract][Full Text] [Related]
9. Structural Characterization of the Cotranscriptional Folding of the Thiamin Pyrophosphate Sensing
Hien EDM; Chauvier A; St-Pierre P; Lafontaine DA
Biochemistry; 2024 Jul; 63(13):1608-1620. PubMed ID: 38864595
[TBL] [Abstract][Full Text] [Related]
10. Ligand-induced folding of the thiM TPP riboswitch investigated by a structure-based fluorescence spectroscopic approach.
Lang K; Rieder R; Micura R
Nucleic Acids Res; 2007; 35(16):5370-8. PubMed ID: 17693433
[TBL] [Abstract][Full Text] [Related]
11. Molecular level insights into the inhibition of gene expression by thiamine pyrophosphate (TPP) analogs for TPP riboswitch: A well-tempered metadynamics simulations study.
Wakchaure PD; Ganguly B
J Mol Graph Model; 2021 May; 104():107849. PubMed ID: 33545607
[TBL] [Abstract][Full Text] [Related]
12. TPP riboswitch aptamer: Role of Mg
Padhi S; Pradhan M; Bung N; Roy A; Bulusu G
J Mol Graph Model; 2019 May; 88():282-291. PubMed ID: 30818079
[TBL] [Abstract][Full Text] [Related]
13. Crystal structure of Escherichia coli thiamine pyrophosphate-sensing riboswitch in the apo state.
Lee HK; Lee YT; Fan L; Wilt HM; Conrad CE; Yu P; Zhang J; Shi G; Ji X; Wang YX; Stagno JR
Structure; 2023 Jul; 31(7):848-859.e3. PubMed ID: 37253356
[TBL] [Abstract][Full Text] [Related]
14. Regulation of the thiamine pyrophosphate (TPP)-sensing riboswitch in NMT1 mRNA from Neurospora crassa.
Gong S; Du C; Wang Y
FEBS Lett; 2020 Feb; 594(4):625-635. PubMed ID: 31664711
[TBL] [Abstract][Full Text] [Related]
15. Imaging metabolite dynamics in living cells using a Spinach-based riboswitch.
You M; Litke JL; Jaffrey SR
Proc Natl Acad Sci U S A; 2015 May; 112(21):E2756-65. PubMed ID: 25964329
[TBL] [Abstract][Full Text] [Related]
16. Exploring the structure, function of thiamine pyrophosphate riboswitch, and designing small molecules for antibacterial activity.
Wakchaure PD; Ganguly B
Wiley Interdiscip Rev RNA; 2023; 14(4):e1774. PubMed ID: 36594112
[TBL] [Abstract][Full Text] [Related]
17. The riboswitch regulates a thiamine pyrophosphate ABC transporter of the oral spirochete Treponema denticola.
Bian J; Shen H; Tu Y; Yu A; Li C
J Bacteriol; 2011 Aug; 193(15):3912-22. PubMed ID: 21622748
[TBL] [Abstract][Full Text] [Related]
18. Validating fragment-based drug discovery for biological RNAs: lead fragments bind and remodel the TPP riboswitch specifically.
Warner KD; Homan P; Weeks KM; Smith AG; Abell C; Ferré-D'Amaré AR
Chem Biol; 2014 May; 21(5):591-5. PubMed ID: 24768306
[TBL] [Abstract][Full Text] [Related]
19. Folding and ligand recognition of the TPP riboswitch aptamer at single-molecule resolution.
Haller A; Altman RB; Soulière MF; Blanchard SC; Micura R
Proc Natl Acad Sci U S A; 2013 Mar; 110(11):4188-93. PubMed ID: 23440214
[TBL] [Abstract][Full Text] [Related]
20. Direct observation of multiple tautomers of oxythiamine and their recognition by the thiamine pyrophosphate riboswitch.
Singh V; Peng CS; Li D; Mitra K; Silvestre KJ; Tokmakoff A; Essigmann JM
ACS Chem Biol; 2014 Jan; 9(1):227-36. PubMed ID: 24252063
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]