BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

382 related articles for article (PubMed ID: 22528264)

  • 1. Optimization of the molecular dynamics method for simulations of DNA and ion transport through biological nanopores.
    Wells DB; Bhattacharya S; Carr R; Maffeo C; Ho A; Comer J; Aksimentiev A
    Methods Mol Biol; 2012; 870():165-86. PubMed ID: 22528264
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Effect of confinement on DNA, solvent and counterion dynamics in a model biological nanopore.
    Markosyan S; De Biase PM; Czapla L; Samoylova O; Singh G; Cuervo J; Tieleman DP; Noskov SY
    Nanoscale; 2014 Aug; 6(15):9006-16. PubMed ID: 24968858
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Modeling nanopores for sequencing DNA.
    Comer JR; Wells DB; Aksimentiev A
    Methods Mol Biol; 2011; 749():317-58. PubMed ID: 21674382
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Biomimetic design of a brush-like nanopore: simulation studies.
    Pongprayoon P; Beckstein O; Sansom MS
    J Phys Chem B; 2012 Jan; 116(1):462-8. PubMed ID: 22129038
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Ionic transport through a protein nanopore: a Coarse-Grained Molecular Dynamics Study.
    Basdevant N; Dessaux D; Ramirez R
    Sci Rep; 2019 Oct; 9(1):15740. PubMed ID: 31673049
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Rational design of ion force fields based on thermodynamic solvation properties.
    Horinek D; Mamatkulov SI; Netz RR
    J Chem Phys; 2009 Mar; 130(12):124507. PubMed ID: 19334851
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Molecular dynamics simulations of ion conductance in field-stabilized nanoscale lipid electropores.
    Ho MC; Casciola M; Levine ZA; Vernier PT
    J Phys Chem B; 2013 Oct; 117(39):11633-40. PubMed ID: 24001115
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Rapid and Accurate Determination of Nanopore Ionic Current Using a Steric Exclusion Model.
    Wilson J; Sarthak K; Si W; Gao L; Aksimentiev A
    ACS Sens; 2019 Mar; 4(3):634-644. PubMed ID: 30821441
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Effects of Nanopore Charge Decorations on the Translocation Dynamics of DNA.
    Jou I; Muthukumar M
    Biophys J; 2017 Oct; 113(8):1664-1672. PubMed ID: 29045861
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Measurements of DNA immobilized in the alpha-hemolysin nanopore.
    Purnell R; Schmidt J
    Methods Mol Biol; 2012; 870():39-53. PubMed ID: 22528257
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Ionic force field optimization based on single-ion and ion-pair solvation properties: going beyond standard mixing rules.
    Fyta M; Netz RR
    J Chem Phys; 2012 Mar; 136(12):124103. PubMed ID: 22462831
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Free-energy calculations reveal the subtle differences in the interactions of DNA bases with α-hemolysin.
    Manara RM; Guy AT; Wallace EJ; Khalid S
    J Chem Theory Comput; 2015 Feb; 11(2):810-6. PubMed ID: 26579606
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Lipid nanobilayers to host biological nanopores for DNA translocations.
    Göpfrich K; Kulkarni CV; Pambos OJ; Keyser UF
    Langmuir; 2013 Jan; 29(1):355-64. PubMed ID: 23214950
    [TBL] [Abstract][Full Text] [Related]  

  • 14. A coarse-grained MARTINI-like force field for DNA unzipping in nanopores.
    Stachiewicz A; Molski A
    J Comput Chem; 2015 May; 36(13):947-56. PubMed ID: 25706623
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Ion transport and molecular organization are coupled in polyelectrolyte-modified nanopores.
    Tagliazucchi M; Rabin Y; Szleifer I
    J Am Chem Soc; 2011 Nov; 133(44):17753-63. PubMed ID: 21942450
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Ion exclusion and electrokinetic effects resulting from electro-osmotic flow of salt solutions in charged silica nanopores.
    Haria NR; Lorenz CD
    Phys Chem Chem Phys; 2012 May; 14(17):5935-44. PubMed ID: 22441317
    [TBL] [Abstract][Full Text] [Related]  

  • 17. DNA unzipping and protein unfolding using nanopores.
    Merstorf C; Cressiot B; Pastoriza-Gallego M; Oukhaled AG; Bacri L; Gierak J; Pelta J; Auvray L; Mathé J
    Methods Mol Biol; 2012; 870():55-75. PubMed ID: 22528258
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Halothane solvation in water and organic solvents from molecular simulations with new polarizable potential function.
    Subbotina JO; Johannes J; Lev B; Noskov SY
    J Phys Chem B; 2010 May; 114(19):6401-8. PubMed ID: 20411978
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Electrokinetic particle translocation through a nanopore containing a floating electrode.
    Zhang M; Ai Y; Sharma A; Joo SW; Kim DS; Qian S
    Electrophoresis; 2011 Jul; 32(14):1864-74. PubMed ID: 21710551
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Molecular dynamics simulations of gramicidin A in a lipid bilayer: from structure-function relations to force fields.
    Baştuğ T; Patra SM; Kuyucak S
    Chem Phys Lipids; 2006 Jun; 141(1-2):197-204. PubMed ID: 16600199
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 20.