These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

119 related articles for article (PubMed ID: 22536297)

  • 1. The stochastic evolution of a protocell: the Gillespie algorithm in a dynamically varying volume.
    Carletti T; Filisetti A
    Comput Math Methods Med; 2012; 2012():423627. PubMed ID: 22536297
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Hybrid deterministic/stochastic simulation of complex biochemical systems.
    Lecca P; Bagagiolo F; Scarpa M
    Mol Biosyst; 2017 Nov; 13(12):2672-2686. PubMed ID: 29058744
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Stochastic simulations of minimal cells: the Ribocell model.
    Mavelli F
    BMC Bioinformatics; 2012 Mar; 13 Suppl 4(Suppl 4):S10. PubMed ID: 22536956
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Life cycle of a minimal protocell--a dissipative particle dynamics study.
    Fellermann H; Rasmussen S; Ziock HJ; Solé RV
    Artif Life; 2007; 13(4):319-45. PubMed ID: 17716015
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Inverse Gillespie for inferring stochastic reaction mechanisms from intermittent samples.
    Chattopadhyay I; Kuchina A; Süel GM; Lipson H
    Proc Natl Acad Sci U S A; 2013 Aug; 110(32):12990-5. PubMed ID: 23878234
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Simulating the cellular passive transport of glucose using a time-dependent extension of Gillespie algorithm for stochastic pi-calculus.
    Lecca P
    Int J Data Min Bioinform; 2007; 1(4):315-36. PubMed ID: 18402045
    [TBL] [Abstract][Full Text] [Related]  

  • 7. STOCKS: STOChastic Kinetic Simulations of biochemical systems with Gillespie algorithm.
    Kierzek AM
    Bioinformatics; 2002 Mar; 18(3):470-81. PubMed ID: 11934747
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Two different template replicators coexisting in the same protocell: stochastic simulation of an extended chemoton model.
    Zachar I; Fedor A; Szathmáry E
    PLoS One; 2011; 6(7):e21380. PubMed ID: 21818258
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Cellular growth and division in the Gillespie algorithm.
    Lu T; Volfson D; Tsimring L; Hasty J
    Syst Biol (Stevenage); 2004 Jun; 1(1):121-8. PubMed ID: 17052122
    [TBL] [Abstract][Full Text] [Related]  

  • 10. A PDE Model for Protocell Evolution and the Origin of Chromosomes via Multilevel Selection.
    Cooney DB; Rossine FW; Morris DH; Levin SA
    Bull Math Biol; 2022 Aug; 84(10):109. PubMed ID: 36030325
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Temporal Gillespie Algorithm: Fast Simulation of Contagion Processes on Time-Varying Networks.
    Vestergaard CL; Génois M
    PLoS Comput Biol; 2015 Oct; 11(10):e1004579. PubMed ID: 26517860
    [TBL] [Abstract][Full Text] [Related]  

  • 12. The N-leap method for stochastic simulation of coupled chemical reactions.
    Xu Y; Lan Y
    J Chem Phys; 2012 Nov; 137(20):204103. PubMed ID: 23205977
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Slow update stochastic simulation algorithms for modeling complex biochemical networks.
    Ghosh D; De RK
    Biosystems; 2017 Dec; 162():135-146. PubMed ID: 29080799
    [TBL] [Abstract][Full Text] [Related]  

  • 14. A multi-algorithm, multi-timescale method for cell simulation.
    Takahashi K; Kaizu K; Hu B; Tomita M
    Bioinformatics; 2004 Mar; 20(4):538-46. PubMed ID: 14990450
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Selfishness versus functional cooperation in a stochastic protocell model.
    Zintzaras E; Santos M; Szathmáry E
    J Theor Biol; 2010 Dec; 267(4):605-13. PubMed ID: 20837027
    [TBL] [Abstract][Full Text] [Related]  

  • 16. BioSimulator.jl: Stochastic simulation in Julia.
    Landeros A; Stutz T; Keys KL; Alekseyenko A; Sinsheimer JS; Lange K; Sehl ME
    Comput Methods Programs Biomed; 2018 Dec; 167():23-35. PubMed ID: 30501857
    [TBL] [Abstract][Full Text] [Related]  

  • 17. A Multi-stage Representation of Cell Proliferation as a Markov Process.
    Yates CA; Ford MJ; Mort RL
    Bull Math Biol; 2017 Dec; 79(12):2905-2928. PubMed ID: 29030804
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Dynamic simulations of single-molecule enzyme networks.
    Armbruster D; Nagy JD; van de Rijt EA; Rooda JE
    J Phys Chem B; 2009 Apr; 113(16):5537-44. PubMed ID: 19326885
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Hybrid stochastic simulations of intracellular reaction-diffusion systems.
    Kalantzis G
    Comput Biol Chem; 2009 Jun; 33(3):205-15. PubMed ID: 19414282
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Reproduction of a protocell by replication of a minority molecule in a catalytic reaction network.
    Kamimura A; Kaneko K
    Phys Rev Lett; 2010 Dec; 105(26):268103. PubMed ID: 21231715
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.