These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

201 related articles for article (PubMed ID: 22536964)

  • 21. Mathematical analysis of the boundary-integral based electrostatics estimation approximation for molecular solvation: exact results for spherical inclusions.
    Bardhan JP; Knepley MG
    J Chem Phys; 2011 Sep; 135(12):124107. PubMed ID: 21974512
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Protein electrostatics: a review of the equations and methods used to model electrostatic equations in biomolecules--applications in biotechnology.
    Neves-Petersen MT; Petersen SB
    Biotechnol Annu Rev; 2003; 9():315-95. PubMed ID: 14650935
    [TBL] [Abstract][Full Text] [Related]  

  • 23. FACTS: Fast analytical continuum treatment of solvation.
    Haberthür U; Caflisch A
    J Comput Chem; 2008 Apr; 29(5):701-15. PubMed ID: 17918282
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Development and test of highly accurate endpoint free energy methods. 1: Evaluation of ABCG2 charge model on solvation free energy prediction and optimization of atom radii suitable for more accurate solvation free energy prediction by the PBSA method.
    Sun Y; He X; Hou T; Cai L; Man VH; Wang J
    J Comput Chem; 2023 May; 44(14):1334-1346. PubMed ID: 36807356
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Using DelPhi to compute electrostatic potentials and assess their contribution to interactions.
    Oron A; Wolfson H; Gunasekaran K; Nussinov R
    Curr Protoc Bioinformatics; 2003 Aug; Chapter 8():Unit 8.4. PubMed ID: 18428711
    [TBL] [Abstract][Full Text] [Related]  

  • 26. An accelerated nonlocal Poisson-Boltzmann equation solver for electrostatics of biomolecule.
    Ying J; Xie D
    Int J Numer Method Biomed Eng; 2018 Nov; 34(11):e3129. PubMed ID: 30021243
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Structure-based pKa calculations using continuum electrostatics methods.
    Fitch CA; García-Moreno E B
    Curr Protoc Bioinformatics; 2007 Jan; Chapter 8():Unit 8.11. PubMed ID: 18428794
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Generalized born model with a simple smoothing function.
    Im W; Lee MS; Brooks CL
    J Comput Chem; 2003 Nov; 24(14):1691-702. PubMed ID: 12964188
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Restoring charge asymmetry in continuum electrostatics calculations of hydration free energies.
    Purisima EO; Sulea T
    J Phys Chem B; 2009 Jun; 113(24):8206-9. PubMed ID: 19459599
    [TBL] [Abstract][Full Text] [Related]  

  • 30. New analytic approximation to the standard molecular volume definition and its application to generalized Born calculations.
    Lee MS; Feig M; Salsbury FR; Brooks CL
    J Comput Chem; 2003 Aug; 24(11):1348-56. PubMed ID: 12827676
    [TBL] [Abstract][Full Text] [Related]  

  • 31. The Intrinsic Radius as a Key Parameter in the Generalized Born Model to Adjust Protein-Protein Electrostatic Interaction.
    Parkin D; Takano M
    Int J Mol Sci; 2023 Feb; 24(5):. PubMed ID: 36902130
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Accuracy Comparison of Generalized Born Models in the Calculation of Electrostatic Binding Free Energies.
    Izadi S; Harris RC; Fenley MO; Onufriev AV
    J Chem Theory Comput; 2018 Mar; 14(3):1656-1670. PubMed ID: 29378399
    [TBL] [Abstract][Full Text] [Related]  

  • 33. An n log n Generalized Born Approximation.
    Anandakrishnan R; Daga M; Onufriev AV
    J Chem Theory Comput; 2011 Mar; 7(3):544-59. PubMed ID: 26596289
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Accuracy assessment of the linear Poisson-Boltzmann equation and reparametrization of the OBC generalized Born model for nucleic acids and nucleic acid-protein complexes.
    Fogolari F; Corazza A; Esposito G
    J Comput Chem; 2015 Apr; 36(9):585-96. PubMed ID: 25581160
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Electrostatic contributions to the binding free energy of the lambdacI repressor to DNA.
    Misra VK; Hecht JL; Yang AS; Honig B
    Biophys J; 1998 Nov; 75(5):2262-73. PubMed ID: 9788922
    [TBL] [Abstract][Full Text] [Related]  

  • 36. An analytical approach to computing biomolecular electrostatic potential. II. Validation and applications.
    Gordon JC; Fenley AT; Onufriev A
    J Chem Phys; 2008 Aug; 129(7):075102. PubMed ID: 19044803
    [TBL] [Abstract][Full Text] [Related]  

  • 37. PBEQ-Solver for online visualization of electrostatic potential of biomolecules.
    Jo S; Vargyas M; Vasko-Szedlar J; Roux B; Im W
    Nucleic Acids Res; 2008 Jul; 36(Web Server issue):W270-5. PubMed ID: 18508808
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Grid-Based Surface Generalized Born Model for Calculation of Electrostatic Binding Free Energies.
    Forouzesh N; Izadi S; Onufriev AV
    J Chem Inf Model; 2017 Oct; 57(10):2505-2513. PubMed ID: 28786669
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Interpreting the Coulomb-field approximation for generalized-Born electrostatics using boundary-integral equation theory.
    Bardhan JP
    J Chem Phys; 2008 Oct; 129(14):144105. PubMed ID: 19045132
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Self-consistent field approach to protein structure and stability. I: pH dependence of electrostatic contribution.
    Dimitrov RA; Crichton RR
    Proteins; 1997 Apr; 27(4):576-96. PubMed ID: 9141137
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 11.