These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

154 related articles for article (PubMed ID: 22537007)

  • 1. Accelerating pairwise statistical significance estimation for local alignment by harvesting GPU's power.
    Zhang Y; Misra S; Agrawal A; Patwary MM; Liao WK; Qin Z; Choudhary A
    BMC Bioinformatics; 2012 Apr; 13 Suppl 5(Suppl 5):S3. PubMed ID: 22537007
    [TBL] [Abstract][Full Text] [Related]  

  • 2. CUDASW++ 3.0: accelerating Smith-Waterman protein database search by coupling CPU and GPU SIMD instructions.
    Liu Y; Wirawan A; Schmidt B
    BMC Bioinformatics; 2013 Apr; 14():117. PubMed ID: 23557111
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Pairwise statistical significance of local sequence alignment using sequence-specific and position-specific substitution matrices.
    Agrawal A; Huang X
    IEEE/ACM Trans Comput Biol Bioinform; 2011; 8(1):194-205. PubMed ID: 21071807
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Parallel Implementation of MAFFT on CUDA-Enabled Graphics Hardware.
    Zhu X; Li K; Salah A; Shi L; Li K
    IEEE/ACM Trans Comput Biol Bioinform; 2015; 12(1):205-18. PubMed ID: 26357090
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Protein alignment algorithms with an efficient backtracking routine on multiple GPUs.
    Blazewicz J; Frohmberg W; Kierzynka M; Pesch E; Wojciechowski P
    BMC Bioinformatics; 2011 May; 12():181. PubMed ID: 21599912
    [TBL] [Abstract][Full Text] [Related]  

  • 6. GPU accelerated sequence alignment with traceback for GATK HaplotypeCaller.
    Ren S; Ahmed N; Bertels K; Al-Ars Z
    BMC Genomics; 2019 Apr; 20(Suppl 2):184. PubMed ID: 30967111
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Pairwise sequence alignment for very long sequences on GPUs.
    Li J; Ranka S; Sahni S
    Int J Bioinform Res Appl; 2014; 10(4-5):345-68. PubMed ID: 24989857
    [TBL] [Abstract][Full Text] [Related]  

  • 8. cuBLASTP: Fine-Grained Parallelization of Protein Sequence Search on CPU+GPU.
    Zhang J; Wang H; Feng WC
    IEEE/ACM Trans Comput Biol Bioinform; 2017; 14(4):830-843. PubMed ID: 26469393
    [TBL] [Abstract][Full Text] [Related]  

  • 9. PSIBLAST_PairwiseStatSig: reordering PSI-BLAST hits using pairwise statistical significance.
    Agrawal A; Huang X
    Bioinformatics; 2009 Apr; 25(8):1082-3. PubMed ID: 19251771
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Accelerating large-scale protein structure alignments with graphics processing units.
    Pang B; Zhao N; Becchi M; Korkin D; Shyu CR
    BMC Res Notes; 2012 Feb; 5():116. PubMed ID: 22357132
    [TBL] [Abstract][Full Text] [Related]  

  • 11. CMSA: a heterogeneous CPU/GPU computing system for multiple similar RNA/DNA sequence alignment.
    Chen X; Wang C; Tang S; Yu C; Zou Q
    BMC Bioinformatics; 2017 Jun; 18(1):315. PubMed ID: 28646874
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Multi-GPU implementation of a VMAT treatment plan optimization algorithm.
    Tian Z; Peng F; Folkerts M; Tan J; Jia X; Jiang SB
    Med Phys; 2015 Jun; 42(6):2841-52. PubMed ID: 26127037
    [TBL] [Abstract][Full Text] [Related]  

  • 13. GPU-BLAST: using graphics processors to accelerate protein sequence alignment.
    Vouzis PD; Sahinidis NV
    Bioinformatics; 2011 Jan; 27(2):182-8. PubMed ID: 21088027
    [TBL] [Abstract][Full Text] [Related]  

  • 14. NMF-mGPU: non-negative matrix factorization on multi-GPU systems.
    Mejía-Roa E; Tabas-Madrid D; Setoain J; García C; Tirado F; Pascual-Montano A
    BMC Bioinformatics; 2015 Feb; 16():43. PubMed ID: 25887585
    [TBL] [Abstract][Full Text] [Related]  

  • 15. High-throughput sequence alignment using Graphics Processing Units.
    Schatz MC; Trapnell C; Delcher AL; Varshney A
    BMC Bioinformatics; 2007 Dec; 8():474. PubMed ID: 18070356
    [TBL] [Abstract][Full Text] [Related]  

  • 16. GASAL2: a GPU accelerated sequence alignment library for high-throughput NGS data.
    Ahmed N; Lévy J; Ren S; Mushtaq H; Bertels K; Al-Ars Z
    BMC Bioinformatics; 2019 Oct; 20(1):520. PubMed ID: 31653208
    [TBL] [Abstract][Full Text] [Related]  

  • 17. CUDA-BLASTP: accelerating BLASTP on CUDA-enabled graphics hardware.
    Liu W; Schmidt B; Müller-Wittig W
    IEEE/ACM Trans Comput Biol Bioinform; 2011; 8(6):1678-84. PubMed ID: 21339531
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Coupling SIMD and SIMT architectures to boost performance of a phylogeny-aware alignment kernel.
    Alachiotis N; Berger SA; Stamatakis A
    BMC Bioinformatics; 2012 Aug; 13():196. PubMed ID: 22876807
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Pairwise statistical significance and empirical determination of effective gap opening penalties for protein local sequence alignment.
    Agrawal A; Brendel VP; Huang X
    Int J Comput Biol Drug Des; 2008; 1(4):347-67. PubMed ID: 20063463
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Pairwise alignment incorporating dipeptide covariation.
    Crooks GE; Green RE; Brenner SE
    Bioinformatics; 2005 Oct; 21(19):3704-10. PubMed ID: 16123116
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.