267 related articles for article (PubMed ID: 22537010)
1. Maximum expected accuracy structural neighbors of an RNA secondary structure.
Clote P; Lou F; Lorenz WA
BMC Bioinformatics; 2012 Apr; 13 Suppl 5(Suppl 5):S6. PubMed ID: 22537010
[TBL] [Abstract][Full Text] [Related]
2. Boltzmann probability of RNA structural neighbors and riboswitch detection.
Freyhult E; Moulton V; Clote P
Bioinformatics; 2007 Aug; 23(16):2054-62. PubMed ID: 17573364
[TBL] [Abstract][Full Text] [Related]
3. RNAbor: a web server for RNA structural neighbors.
Freyhult E; Moulton V; Clote P
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W305-9. PubMed ID: 17526527
[TBL] [Abstract][Full Text] [Related]
4. Computing the partition function and sampling for saturated secondary structures of RNA, with respect to the Turner energy model.
Waldispühl J; Clote P
J Comput Biol; 2007 Mar; 14(2):190-215. PubMed ID: 17456015
[TBL] [Abstract][Full Text] [Related]
5. Expected degree for RNA secondary structure networks.
Clote P
J Comput Chem; 2015 Jan; 36(2):103-17. PubMed ID: 25382310
[TBL] [Abstract][Full Text] [Related]
6. Analysis of energy-based algorithms for RNA secondary structure prediction.
Hajiaghayi M; Condon A; Hoos HH
BMC Bioinformatics; 2012 Feb; 13():22. PubMed ID: 22296803
[TBL] [Abstract][Full Text] [Related]
7. Computing the partition function for kinetically trapped RNA secondary structures.
Lorenz WA; Clote P
PLoS One; 2011 Jan; 6(1):e16178. PubMed ID: 21297972
[TBL] [Abstract][Full Text] [Related]
8. Using the fast fourier transform to accelerate the computational search for RNA conformational switches.
Senter E; Sheikh S; Dotu I; Ponty Y; Clote P
PLoS One; 2012; 7(12):e50506. PubMed ID: 23284639
[TBL] [Abstract][Full Text] [Related]
9. Computing the probability of RNA hairpin and multiloop formation.
Ding Y; Lorenz WA; Dotu I; Senter E; Clote P
J Comput Biol; 2014 Mar; 21(3):201-18. PubMed ID: 24559086
[TBL] [Abstract][Full Text] [Related]
10. RNA folding pathways and kinetics using 2D energy landscapes.
Senter E; Dotu I; Clote P
J Math Biol; 2015 Jan; 70(1-2):173-96. PubMed ID: 24515409
[TBL] [Abstract][Full Text] [Related]
11. Asymptotic number of hairpins of saturated RNA secondary structures.
Clote P; Kranakis E; Krizanc D
Bull Math Biol; 2013 Dec; 75(12):2410-30. PubMed ID: 24142625
[TBL] [Abstract][Full Text] [Related]
12. Capturing alternative secondary structures of RNA by decomposition of base-pairing probabilities.
Hagio T; Sakuraba S; Iwakiri J; Mori R; Asai K
BMC Bioinformatics; 2018 Feb; 19(Suppl 1):38. PubMed ID: 29504917
[TBL] [Abstract][Full Text] [Related]
13. TurboFold: iterative probabilistic estimation of secondary structures for multiple RNA sequences.
Harmanci AO; Sharma G; Mathews DH
BMC Bioinformatics; 2011 Apr; 12():108. PubMed ID: 21507242
[TBL] [Abstract][Full Text] [Related]
14. Efficient algorithms for probing the RNA mutation landscape.
Waldispühl J; Devadas S; Berger B; Clote P
PLoS Comput Biol; 2008 Aug; 4(8):e1000124. PubMed ID: 18688270
[TBL] [Abstract][Full Text] [Related]
15. Computing folding pathways between RNA secondary structures.
Dotu I; Lorenz WA; Van Hentenryck P; Clote P
Nucleic Acids Res; 2010 Mar; 38(5):1711-22. PubMed ID: 20044352
[TBL] [Abstract][Full Text] [Related]
16. Network Properties of the Ensemble of RNA Structures.
Clote P; Bayegan A
PLoS One; 2015; 10(10):e0139476. PubMed ID: 26488894
[TBL] [Abstract][Full Text] [Related]
17. Thermodynamics of RNA structures by Wang-Landau sampling.
Lou F; Clote P
Bioinformatics; 2010 Jun; 26(12):i278-86. PubMed ID: 20529917
[TBL] [Abstract][Full Text] [Related]
18. RNAdualPF: software to compute the dual partition function with sample applications in molecular evolution theory.
Garcia-Martin JA; Bayegan AH; Dotu I; Clote P
BMC Bioinformatics; 2016 Oct; 17(1):424. PubMed ID: 27756204
[TBL] [Abstract][Full Text] [Related]
19. Energy landscape of k-point mutants of an RNA molecule.
Clote P; Waldispühl J; Behzadi B; Steyaert JM
Bioinformatics; 2005 Nov; 21(22):4140-7. PubMed ID: 16159920
[TBL] [Abstract][Full Text] [Related]
20. An efficient algorithm to compute the landscape of locally optimal RNA secondary structures with respect to the Nussinov-Jacobson energy model.
Clote P
J Comput Biol; 2005; 12(1):83-101. PubMed ID: 15725735
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
