178 related articles for article (PubMed ID: 22537039)
1. Reconstructing cancer genomes from paired-end sequencing data.
Oesper L; Ritz A; Aerni SJ; Drebin R; Raphael BJ
BMC Bioinformatics; 2012 Apr; 13 Suppl 6(Suppl 6):S10. PubMed ID: 22537039
[TBL] [Abstract][Full Text] [Related]
2. Reconstructing genome mixtures from partial adjacencies.
Mahmoody A; Kahn CL; Raphael BJ
BMC Bioinformatics; 2012; 13 Suppl 19(Suppl 19):S9. PubMed ID: 23282028
[TBL] [Abstract][Full Text] [Related]
3. Identifying structural variants using linked-read sequencing data.
Elyanow R; Wu HT; Raphael BJ
Bioinformatics; 2018 Jan; 34(2):353-360. PubMed ID: 29112732
[TBL] [Abstract][Full Text] [Related]
4. Detection of recurrent rearrangement breakpoints from copy number data.
Ritz A; Paris PL; Ittmann MM; Collins C; Raphael BJ
BMC Bioinformatics; 2011 Apr; 12():114. PubMed ID: 21510904
[TBL] [Abstract][Full Text] [Related]
5. Reconstructing cancer karyotypes from short read data: the half empty and half full glass.
Eitan R; Shamir R
BMC Bioinformatics; 2017 Nov; 18(1):488. PubMed ID: 29141589
[TBL] [Abstract][Full Text] [Related]
6. Structural variation analysis with strobe reads.
Ritz A; Bashir A; Raphael BJ
Bioinformatics; 2010 May; 26(10):1291-8. PubMed ID: 20378554
[TBL] [Abstract][Full Text] [Related]
7. A geometric approach for classification and comparison of structural variants.
Sindi S; Helman E; Bashir A; Raphael BJ
Bioinformatics; 2009 Jun; 25(12):i222-30. PubMed ID: 19477992
[TBL] [Abstract][Full Text] [Related]
8. Comprehensive long-span paired-end-tag mapping reveals characteristic patterns of structural variations in epithelial cancer genomes.
Hillmer AM; Yao F; Inaki K; Lee WH; Ariyaratne PN; Teo AS; Woo XY; Zhang Z; Zhao H; Ukil L; Chen JP; Zhu F; So JB; Salto-Tellez M; Poh WT; Zawack KF; Nagarajan N; Gao S; Li G; Kumar V; Lim HP; Sia YY; Chan CS; Leong ST; Neo SC; Choi PS; Thoreau H; Tan PB; Shahab A; Ruan X; Bergh J; Hall P; Cacheux-Rataboul V; Wei CL; Yeoh KG; Sung WK; Bourque G; Liu ET; Ruan Y
Genome Res; 2011 May; 21(5):665-75. PubMed ID: 21467267
[TBL] [Abstract][Full Text] [Related]
9. Diverse mechanisms of somatic structural variations in human cancer genomes.
Yang L; Luquette LJ; Gehlenborg N; Xi R; Haseley PS; Hsieh CH; Zhang C; Ren X; Protopopov A; Chin L; Kucherlapati R; Lee C; Park PJ
Cell; 2013 May; 153(4):919-29. PubMed ID: 23663786
[TBL] [Abstract][Full Text] [Related]
10. DB2: a probabilistic approach for accurate detection of tandem duplication breakpoints using paired-end reads.
Yavaş G; Koyutürk M; Gould MP; McMahon S; LaFramboise T
BMC Genomics; 2014 Mar; 15(1):175. PubMed ID: 24597945
[TBL] [Abstract][Full Text] [Related]
11. A streamlined method for detecting structural variants in cancer genomes by short read paired-end sequencing.
Mijušković M; Brown SM; Tang Z; Lindsay CR; Efstathiadis E; Deriano L; Roth DB
PLoS One; 2012; 7(10):e48314. PubMed ID: 23144753
[TBL] [Abstract][Full Text] [Related]
12. Evaluation of paired-end sequencing strategies for detection of genome rearrangements in cancer.
Bashir A; Volik S; Collins C; Bafna V; Raphael BJ
PLoS Comput Biol; 2008 Apr; 4(4):e1000051. PubMed ID: 18404202
[TBL] [Abstract][Full Text] [Related]
13. Long span DNA paired-end-tag (DNA-PET) sequencing strategy for the interrogation of genomic structural mutations and fusion-point-guided reconstruction of amplicons.
Yao F; Ariyaratne PN; Hillmer AM; Lee WH; Li G; Teo AS; Woo XY; Zhang Z; Chen JP; Poh WT; Zawack KF; Chan CS; Leong ST; Neo SC; Choi PS; Gao S; Nagarajan N; Thoreau H; Shahab A; Ruan X; Cacheux-Rataboul V; Wei CL; Bourque G; Sung WK; Liu ET; Ruan Y
PLoS One; 2012; 7(9):e46152. PubMed ID: 23029419
[TBL] [Abstract][Full Text] [Related]
14. Identification of somatically acquired rearrangements in cancer using genome-wide massively parallel paired-end sequencing.
Campbell PJ; Stephens PJ; Pleasance ED; O'Meara S; Li H; Santarius T; Stebbings LA; Leroy C; Edkins S; Hardy C; Teague JW; Menzies A; Goodhead I; Turner DJ; Clee CM; Quail MA; Cox A; Brown C; Durbin R; Hurles ME; Edwards PA; Bignell GR; Stratton MR; Futreal PA
Nat Genet; 2008 Jun; 40(6):722-9. PubMed ID: 18438408
[TBL] [Abstract][Full Text] [Related]
15. Detecting independent and recurrent copy number aberrations using interval graphs.
Wu HT; Hajirasouliha I; Raphael BJ
Bioinformatics; 2014 Jun; 30(12):i195-203. PubMed ID: 24931984
[TBL] [Abstract][Full Text] [Related]
16. Identification of large rearrangements in cancer genomes with barcode linked reads.
Xia LC; Bell JM; Wood-Bouwens C; Chen JJ; Zhang NR; Ji HP
Nucleic Acids Res; 2018 Feb; 46(4):e19. PubMed ID: 29186506
[TBL] [Abstract][Full Text] [Related]
17. VarScan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencing.
Koboldt DC; Zhang Q; Larson DE; Shen D; McLellan MD; Lin L; Miller CA; Mardis ER; Ding L; Wilson RK
Genome Res; 2012 Mar; 22(3):568-76. PubMed ID: 22300766
[TBL] [Abstract][Full Text] [Related]
18. Integrative reconstruction of cancer genome karyotypes using InfoGenomeR.
Lee Y; Lee H
Nat Commun; 2021 Apr; 12(1):2467. PubMed ID: 33927198
[TBL] [Abstract][Full Text] [Related]
19. Resolving complex structural genomic rearrangements using a randomized approach.
Zhao X; Emery SB; Myers B; Kidd JM; Mills RE
Genome Biol; 2016 Jun; 17(1):126. PubMed ID: 27287201
[TBL] [Abstract][Full Text] [Related]
20. Recovering rearranged cancer chromosomes from karyotype graphs.
Aganezov S; Zban I; Aksenov V; Alexeev N; Schatz MC
BMC Bioinformatics; 2019 Dec; 20(Suppl 20):641. PubMed ID: 31842730
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
