These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
213 related articles for article (PubMed ID: 22544766)
1. Rotamer libraries and probabilities of transition between rotamers for the side chains in protein-protein binding. Kirys T; Ruvinsky AM; Tuzikov AV; Vakser IA Proteins; 2012 Aug; 80(8):2089-98. PubMed ID: 22544766 [TBL] [Abstract][Full Text] [Related]
2. Correlation analysis of the side-chains conformational distribution in bound and unbound proteins. Kirys T; Ruvinsky AM; Tuzikov AV; Vakser IA BMC Bioinformatics; 2012 Sep; 13():236. PubMed ID: 22984947 [TBL] [Abstract][Full Text] [Related]
3. Statistical and conformational analysis of the electron density of protein side chains. Shapovalov MV; Dunbrack RL Proteins; 2007 Feb; 66(2):279-303. PubMed ID: 17080462 [TBL] [Abstract][Full Text] [Related]
4. Toward the Accuracy and Speed of Protein Side-Chain Packing: A Systematic Study on Rotamer Libraries. Huang X; Pearce R; Zhang Y J Chem Inf Model; 2020 Jan; 60(1):410-420. PubMed ID: 31851497 [TBL] [Abstract][Full Text] [Related]
5. IRECS: a new algorithm for the selection of most probable ensembles of side-chain conformations in protein models. Hartmann C; Antes I; Lengauer T Protein Sci; 2007 Jul; 16(7):1294-307. PubMed ID: 17567749 [TBL] [Abstract][Full Text] [Related]
6. A smoothed backbone-dependent rotamer library for proteins derived from adaptive kernel density estimates and regressions. Shapovalov MV; Dunbrack RL Structure; 2011 Jun; 19(6):844-58. PubMed ID: 21645855 [TBL] [Abstract][Full Text] [Related]
7. Exploiting Sequence-Dependent Rotamer Information in Global Optimization of Proteins. Dicks L; Wales DJ J Phys Chem B; 2022 Oct; 126(42):8381-8390. PubMed ID: 36257022 [TBL] [Abstract][Full Text] [Related]
8. Protein design using continuous rotamers. Gainza P; Roberts KE; Donald BR PLoS Comput Biol; 2012 Jan; 8(1):e1002335. PubMed ID: 22279426 [TBL] [Abstract][Full Text] [Related]
9. Rotamers: to be or not to be? An analysis of amino acid side-chain conformations in globular proteins. Schrauber H; Eisenhaber F; Argos P J Mol Biol; 1993 Mar; 230(2):592-612. PubMed ID: 8464066 [TBL] [Abstract][Full Text] [Related]
10. The Dynameomics rotamer library: amino acid side chain conformations and dynamics from comprehensive molecular dynamics simulations in water. Scouras AD; Daggett V Protein Sci; 2011 Feb; 20(2):341-52. PubMed ID: 21280126 [TBL] [Abstract][Full Text] [Related]
11. The energetics of off-rotamer protein side-chain conformations. Petrella RJ; Karplus M J Mol Biol; 2001 Oct; 312(5):1161-75. PubMed ID: 11580256 [TBL] [Abstract][Full Text] [Related]
12. The penultimate rotamer library. Lovell SC; Word JM; Richardson JS; Richardson DC Proteins; 2000 Aug; 40(3):389-408. PubMed ID: 10861930 [TBL] [Abstract][Full Text] [Related]
16. Rotamer Dynamics: Analysis of Rotamers in Molecular Dynamics Simulations of Proteins. Haddad Y; Adam V; Heger Z Biophys J; 2019 Jun; 116(11):2062-2072. PubMed ID: 31084902 [TBL] [Abstract][Full Text] [Related]
17. Free energies of amino acid side-chain rotamers in alpha-helices, beta-sheets and alpha-helix N-caps. Stapley BJ; Doig AJ J Mol Biol; 1997 Sep; 272(3):456-64. PubMed ID: 9325103 [TBL] [Abstract][Full Text] [Related]
18. Side-chain rotamer changes upon ligand binding: common, crucial, correlate with entropy and rearrange hydrogen bonding. Gaudreault F; Chartier M; Najmanovich R Bioinformatics; 2012 Sep; 28(18):i423-i430. PubMed ID: 22962462 [TBL] [Abstract][Full Text] [Related]
19. A backbone-dependent rotamer library with high (ϕ, ψ) coverage using metadynamics simulations. Mortensen JC; Damjanovic J; Miao J; Hui T; Lin YS Protein Sci; 2022 Dec; 31(12):e4491. PubMed ID: 36327064 [TBL] [Abstract][Full Text] [Related]
20. Improved side-chain prediction accuracy using an ab initio potential energy function and a very large rotamer library. Peterson RW; Dutton PL; Wand AJ Protein Sci; 2004 Mar; 13(3):735-51. PubMed ID: 14978310 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]