These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
135 related articles for article (PubMed ID: 22554028)
21. Selection of Appropriate Metagenome Taxonomic Classifiers for Ancient Microbiome Research. Velsko IM; Frantz LAF; Herbig A; Larson G; Warinner C mSystems; 2018; 3(4):. PubMed ID: 30035235 [TBL] [Abstract][Full Text] [Related]
22. Metagenomic signatures of 86 microbial and viral metagenomes. Willner D; Thurber RV; Rohwer F Environ Microbiol; 2009 Jul; 11(7):1752-66. PubMed ID: 19302541 [TBL] [Abstract][Full Text] [Related]
23. Deciphering the enigma of undetected species, phylogenetic, and functional diversity based on Good-Turing theory. Chao A; Chiu CH; Colwell RK; Magnago LFS; Chazdon RL; Gotelli NJ Ecology; 2017 Nov; 98(11):2914-2929. PubMed ID: 28869780 [TBL] [Abstract][Full Text] [Related]
24. The impact of normalization and phylogenetic information on estimating the distance for metagenomes. Su CH; Wang TY; Hsu MT; Weng FC; Kao CY; Wang D; Tsai HK IEEE/ACM Trans Comput Biol Bioinform; 2012; 9(2):619-28. PubMed ID: 21844636 [TBL] [Abstract][Full Text] [Related]
25. Phylogenetic community ecology of soil biodiversity using mitochondrial metagenomics. Andújar C; Arribas P; Ruzicka F; Crampton-Platt A; Timmermans MJ; Vogler AP Mol Ecol; 2015 Jul; 24(14):3603-17. PubMed ID: 25865150 [TBL] [Abstract][Full Text] [Related]
26. GraftM: a tool for scalable, phylogenetically informed classification of genes within metagenomes. Boyd JA; Woodcroft BJ; Tyson GW Nucleic Acids Res; 2018 Jun; 46(10):e59. PubMed ID: 29562347 [TBL] [Abstract][Full Text] [Related]
27. Statistical evaluation of methods for identification of differentially abundant genes in comparative metagenomics. Jonsson V; Österlund T; Nerman O; Kristiansson E BMC Genomics; 2016 Jan; 17():78. PubMed ID: 26810311 [TBL] [Abstract][Full Text] [Related]
28. Broadscale Ecological Patterns Are Robust to Use of Exact Sequence Variants versus Operational Taxonomic Units. Glassman SI; Martiny JBH mSphere; 2018 Jul; 3(4):. PubMed ID: 30021874 [TBL] [Abstract][Full Text] [Related]
29. Captured metagenomics: large-scale targeting of genes based on 'sequence capture' reveals functional diversity in soils. Manoharan L; Kushwaha SK; Hedlund K; Ahrén D DNA Res; 2015 Dec; 22(6):451-60. PubMed ID: 26490729 [TBL] [Abstract][Full Text] [Related]
30. MetaRank: a rank conversion scheme for comparative analysis of microbial community compositions. Wang TY; Su CH; Tsai HK Bioinformatics; 2011 Dec; 27(24):3341-7. PubMed ID: 22016405 [TBL] [Abstract][Full Text] [Related]
32. Merging metagenomics and geochemistry reveals environmental controls on biological diversity and evolution. Alsop EB; Boyd ES; Raymond J BMC Ecol; 2014 May; 14():16. PubMed ID: 24886397 [TBL] [Abstract][Full Text] [Related]
33. Gene prediction with Glimmer for metagenomic sequences augmented by classification and clustering. Kelley DR; Liu B; Delcher AL; Pop M; Salzberg SL Nucleic Acids Res; 2012 Jan; 40(1):e9. PubMed ID: 22102569 [TBL] [Abstract][Full Text] [Related]
34. Metagenome comparison (MC): A new framework for detecting unique/enriched OMUs (operational metagenomic units) derived from whole-genome sequencing reads. Ma ZS Comput Biol Med; 2024 Sep; 180():108852. PubMed ID: 39137667 [TBL] [Abstract][Full Text] [Related]
35. Towards a balanced view of the bacterial tree of life. Schulz F; Eloe-Fadrosh EA; Bowers RM; Jarett J; Nielsen T; Ivanova NN; Kyrpides NC; Woyke T Microbiome; 2017 Oct; 5(1):140. PubMed ID: 29041958 [TBL] [Abstract][Full Text] [Related]
36. Integration of Ecology and Environmental Metagenomics Conceptual and Methodological Frameworks. Marco D Curr Issues Mol Biol; 2017; 24():1-16. PubMed ID: 28686565 [TBL] [Abstract][Full Text] [Related]
37. Quality control of microbiota metagenomics by k-mer analysis. Plaza Onate F; Batto JM; Juste C; Fadlallah J; Fougeroux C; Gouas D; Pons N; Kennedy S; Levenez F; Dore J; Ehrlich SD; Gorochov G; Larsen M BMC Genomics; 2015 Mar; 16(1):183. PubMed ID: 25887914 [TBL] [Abstract][Full Text] [Related]