216 related articles for article (PubMed ID: 22555592)
1. HaploMerger: reconstructing allelic relationships for polymorphic diploid genome assemblies.
Huang S; Chen Z; Huang G; Yu T; Yang P; Li J; Fu Y; Yuan S; Chen S; Xu A
Genome Res; 2012 Aug; 22(8):1581-8. PubMed ID: 22555592
[TBL] [Abstract][Full Text] [Related]
2. Purge Haplotigs: allelic contig reassignment for third-gen diploid genome assemblies.
Roach MJ; Schmidt SA; Borneman AR
BMC Bioinformatics; 2018 Nov; 19(1):460. PubMed ID: 30497373
[TBL] [Abstract][Full Text] [Related]
3. HaploMerger2: rebuilding both haploid sub-assemblies from high-heterozygosity diploid genome assembly.
Huang S; Kang M; Xu A
Bioinformatics; 2017 Aug; 33(16):2577-2579. PubMed ID: 28407147
[TBL] [Abstract][Full Text] [Related]
4. Assembly of polymorphic genomes: algorithms and application to Ciona savignyi.
Vinson JP; Jaffe DB; O'Neill K; Karlsson EK; Stange-Thomann N; Anderson S; Mesirov JP; Satoh N; Satou Y; Nusbaum C; Birren B; Galagan JE; Lander ES
Genome Res; 2005 Aug; 15(8):1127-35. PubMed ID: 16077012
[TBL] [Abstract][Full Text] [Related]
5. Assembly of complete diploid-phased chromosomes from draft genome sequences.
Minio A; Cochetel N; Vondras AM; Massonnet M; Cantu D
G3 (Bethesda); 2022 Jul; 12(8):. PubMed ID: 35686922
[TBL] [Abstract][Full Text] [Related]
6. Semi-automated assembly of high-quality diploid human reference genomes.
Jarvis ED; Formenti G; Rhie A; Guarracino A; Yang C; Wood J; Tracey A; Thibaud-Nissen F; Vollger MR; Porubsky D; Cheng H; Asri M; Logsdon GA; Carnevali P; Chaisson MJP; Chin CS; Cody S; Collins J; Ebert P; Escalona M; Fedrigo O; Fulton RS; Fulton LL; Garg S; Gerton JL; Ghurye J; Granat A; Green RE; Harvey W; Hasenfeld P; Hastie A; Haukness M; Jaeger EB; Jain M; Kirsche M; Kolmogorov M; Korbel JO; Koren S; Korlach J; Lee J; Li D; Lindsay T; Lucas J; Luo F; Marschall T; Mitchell MW; McDaniel J; Nie F; Olsen HE; Olson ND; Pesout T; Potapova T; Puiu D; Regier A; Ruan J; Salzberg SL; Sanders AD; Schatz MC; Schmitt A; Schneider VA; Selvaraj S; Shafin K; Shumate A; Stitziel NO; Stober C; Torrance J; Wagner J; Wang J; Wenger A; Xiao C; Zimin AV; Zhang G; Wang T; Li H; Garrison E; Haussler D; Hall I; Zook JM; Eichler EE; Phillippy AM; Paten B; Howe K; Miga KH;
Nature; 2022 Nov; 611(7936):519-531. PubMed ID: 36261518
[TBL] [Abstract][Full Text] [Related]
7. A Genetic Algorithm for Diploid Genome Reconstruction Using Paired-End Sequencing.
Ting CK; Lin CS; Chan MT; Chen JW; Chuang SY; Huang YT
PLoS One; 2016; 11(11):e0166721. PubMed ID: 27861560
[TBL] [Abstract][Full Text] [Related]
8. A comparative analysis of methods for de novo assembly of hymenopteran genomes using either haploid or diploid samples.
Yahav T; Privman E
Sci Rep; 2019 Apr; 9(1):6480. PubMed ID: 31019201
[TBL] [Abstract][Full Text] [Related]
9. Phased diploid genome assembly with single-molecule real-time sequencing.
Chin CS; Peluso P; Sedlazeck FJ; Nattestad M; Concepcion GT; Clum A; Dunn C; O'Malley R; Figueroa-Balderas R; Morales-Cruz A; Cramer GR; Delledonne M; Luo C; Ecker JR; Cantu D; Rank DR; Schatz MC
Nat Methods; 2016 Dec; 13(12):1050-1054. PubMed ID: 27749838
[TBL] [Abstract][Full Text] [Related]
10. Single-pollen-cell sequencing for gamete-based phased diploid genome assembly in plants.
Shi D; Wu J; Tang H; Yin H; Wang H; Wang R; Wang R; Qian M; Wu J; Qi K; Xie Z; Wang Z; Zhao X; Zhang S
Genome Res; 2019 Nov; 29(11):1889-1899. PubMed ID: 31649061
[TBL] [Abstract][Full Text] [Related]
11. Diploid Genome Assembly of the Wine Grape Carménère.
Minio A; Massonnet M; Figueroa-Balderas R; Castro A; Cantu D
G3 (Bethesda); 2019 May; 9(5):1331-1337. PubMed ID: 30923135
[TBL] [Abstract][Full Text] [Related]
12. A haplome alignment and reference sequence of the highly polymorphic Ciona savignyi genome.
Small KS; Brudno M; Hill MM; Sidow A
Genome Biol; 2007; 8(3):R41. PubMed ID: 17374142
[TBL] [Abstract][Full Text] [Related]
13. Overcoming uncollapsed haplotypes in long-read assemblies of non-model organisms.
Guiglielmoni N; Houtain A; Derzelle A; Van Doninck K; Flot JF
BMC Bioinformatics; 2021 Jun; 22(1):303. PubMed ID: 34090340
[TBL] [Abstract][Full Text] [Related]
14. Recovering individual haplotypes and a contiguous genome assembly from pooled long-read sequencing of the diamondback moth (Lepidoptera: Plutellidae).
Whiteford S; Van't Hof AE; Krishna R; Marubbi T; Widdison S; Saccheri IJ; Guest M; Morrison NI; Darby AC
G3 (Bethesda); 2022 Sep; 12(10):. PubMed ID: 35980174
[TBL] [Abstract][Full Text] [Related]
15. De novo assembly and phasing of a Korean human genome.
Seo JS; Rhie A; Kim J; Lee S; Sohn MH; Kim CU; Hastie A; Cao H; Yun JY; Kim J; Kuk J; Park GH; Kim J; Ryu H; Kim J; Roh M; Baek J; Hunkapiller MW; Korlach J; Shin JY; Kim C
Nature; 2016 Oct; 538(7624):243-247. PubMed ID: 27706134
[TBL] [Abstract][Full Text] [Related]
16. EST analysis of mRNAs expressed in neurula of Chinese amphioxus.
Mou CY; Zhang SC; Lin JH; Yang WL; Wu WY; Wei JW; Wu XK; Du JC; Fu ZY; Ye LT; Lu Y; Xie XJ; Wang YL; Xu AL
Biochem Biophys Res Commun; 2002 Nov; 299(1):74-84. PubMed ID: 12435391
[TBL] [Abstract][Full Text] [Related]
17. The diploid genome sequence of an Asian individual.
Wang J; Wang W; Li R; Li Y; Tian G; Goodman L; Fan W; Zhang J; Li J; Zhang J; Guo Y; Feng B; Li H; Lu Y; Fang X; Liang H; Du Z; Li D; Zhao Y; Hu Y; Yang Z; Zheng H; Hellmann I; Inouye M; Pool J; Yi X; Zhao J; Duan J; Zhou Y; Qin J; Ma L; Li G; Yang Z; Zhang G; Yang B; Yu C; Liang F; Li W; Li S; Li D; Ni P; Ruan J; Li Q; Zhu H; Liu D; Lu Z; Li N; Guo G; Zhang J; Ye J; Fang L; Hao Q; Chen Q; Liang Y; Su Y; San A; Ping C; Yang S; Chen F; Li L; Zhou K; Zheng H; Ren Y; Yang L; Gao Y; Yang G; Li Z; Feng X; Kristiansen K; Wong GK; Nielsen R; Durbin R; Bolund L; Zhang X; Li S; Yang H; Wang J
Nature; 2008 Nov; 456(7218):60-5. PubMed ID: 18987735
[TBL] [Abstract][Full Text] [Related]
18. phasebook: haplotype-aware de novo assembly of diploid genomes from long reads.
Luo X; Kang X; Schönhuth A
Genome Biol; 2021 Oct; 22(1):299. PubMed ID: 34706745
[TBL] [Abstract][Full Text] [Related]
19. A draft human pangenome reference.
Liao WW; Asri M; Ebler J; Doerr D; Haukness M; Hickey G; Lu S; Lucas JK; Monlong J; Abel HJ; Buonaiuto S; Chang XH; Cheng H; Chu J; Colonna V; Eizenga JM; Feng X; Fischer C; Fulton RS; Garg S; Groza C; Guarracino A; Harvey WT; Heumos S; Howe K; Jain M; Lu TY; Markello C; Martin FJ; Mitchell MW; Munson KM; Mwaniki MN; Novak AM; Olsen HE; Pesout T; Porubsky D; Prins P; Sibbesen JA; Sirén J; Tomlinson C; Villani F; Vollger MR; Antonacci-Fulton LL; Baid G; Baker CA; Belyaeva A; Billis K; Carroll A; Chang PC; Cody S; Cook DE; Cook-Deegan RM; Cornejo OE; Diekhans M; Ebert P; Fairley S; Fedrigo O; Felsenfeld AL; Formenti G; Frankish A; Gao Y; Garrison NA; Giron CG; Green RE; Haggerty L; Hoekzema K; Hourlier T; Ji HP; Kenny EE; Koenig BA; Kolesnikov A; Korbel JO; Kordosky J; Koren S; Lee H; Lewis AP; Magalhães H; Marco-Sola S; Marijon P; McCartney A; McDaniel J; Mountcastle J; Nattestad M; Nurk S; Olson ND; Popejoy AB; Puiu D; Rautiainen M; Regier AA; Rhie A; Sacco S; Sanders AD; Schneider VA; Schultz BI; Shafin K; Smith MW; Sofia HJ; Abou Tayoun AN; Thibaud-Nissen F; Tricomi FF; Wagner J; Walenz B; Wood JMD; Zimin AV; Bourque G; Chaisson MJP; Flicek P; Phillippy AM; Zook JM; Eichler EE; Haussler D; Wang T; Jarvis ED; Miga KH; Garrison E; Marschall T; Hall IM; Li H; Paten B
Nature; 2023 May; 617(7960):312-324. PubMed ID: 37165242
[TBL] [Abstract][Full Text] [Related]
20. Assembly and diploid architecture of an individual human genome via single-molecule technologies.
Pendleton M; Sebra R; Pang AW; Ummat A; Franzen O; Rausch T; Stütz AM; Stedman W; Anantharaman T; Hastie A; Dai H; Fritz MH; Cao H; Cohain A; Deikus G; Durrett RE; Blanchard SC; Altman R; Chin CS; Guo Y; Paxinos EE; Korbel JO; Darnell RB; McCombie WR; Kwok PY; Mason CE; Schadt EE; Bashir A
Nat Methods; 2015 Aug; 12(8):780-6. PubMed ID: 26121404
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
