343 related articles for article (PubMed ID: 22556365)
21. CUSHAW: a CUDA compatible short read aligner to large genomes based on the Burrows-Wheeler transform.
Liu Y; Schmidt B; Maskell DL
Bioinformatics; 2012 Jul; 28(14):1830-7. PubMed ID: 22576173
[TBL] [Abstract][Full Text] [Related]
22. New method for yeast identification using Burrows-Wheeler transform.
Pokrzywa R
J Bioinform Comput Biol; 2008 Apr; 6(2):403-13. PubMed ID: 18464330
[TBL] [Abstract][Full Text] [Related]
23. Graphical pan-genome analysis with compressed suffix trees and the Burrows-Wheeler transform.
Baier U; Beller T; Ohlebusch E
Bioinformatics; 2016 Feb; 32(4):497-504. PubMed ID: 26504144
[TBL] [Abstract][Full Text] [Related]
24. FSG: Fast String Graph Construction for De Novo Assembly.
Bonizzoni P; Vedova GD; Pirola Y; Previtali M; Rizzi R
J Comput Biol; 2017 Oct; 24(10):953-968. PubMed ID: 28715269
[TBL] [Abstract][Full Text] [Related]
25. GDC 2: Compression of large collections of genomes.
Deorowicz S; Danek A; Niemiec M
Sci Rep; 2015 Jun; 5():11565. PubMed ID: 26108279
[TBL] [Abstract][Full Text] [Related]
26. PQSDC: a parallel lossless compressor for quality scores data via sequences partition and run-length prediction mapping.
Sun H; Zheng Y; Xie H; Ma H; Zhong C; Yan M; Liu X; Wang G
Bioinformatics; 2024 May; 40(5):. PubMed ID: 38759114
[TBL] [Abstract][Full Text] [Related]
27. A space and time-efficient index for the compacted colored de Bruijn graph.
Almodaresi F; Sarkar H; Srivastava A; Patro R
Bioinformatics; 2018 Jul; 34(13):i169-i177. PubMed ID: 29949982
[TBL] [Abstract][Full Text] [Related]
28. SPRING: a next-generation compressor for FASTQ data.
Chandak S; Tatwawadi K; Ochoa I; Hernaez M; Weissman T
Bioinformatics; 2019 Aug; 35(15):2674-2676. PubMed ID: 30535063
[TBL] [Abstract][Full Text] [Related]
29. Text compression using hybrids of BWT and GBAM.
Al-Nassiri A
Int J Neural Syst; 2003 Feb; 13(1):39-45. PubMed ID: 12638122
[TBL] [Abstract][Full Text] [Related]
30. GTRAC: fast retrieval from compressed collections of genomic variants.
Tatwawadi K; Hernaez M; Ochoa I; Weissman T
Bioinformatics; 2016 Sep; 32(17):i479-i486. PubMed ID: 27587665
[TBL] [Abstract][Full Text] [Related]
31. Centrifuge: rapid and sensitive classification of metagenomic sequences.
Kim D; Song L; Breitwieser FP; Salzberg SL
Genome Res; 2016 Dec; 26(12):1721-1729. PubMed ID: 27852649
[TBL] [Abstract][Full Text] [Related]
32. Parallel and Space-Efficient Construction of Burrows-Wheeler Transform and Suffix Array for Big Genome Data.
Liu Y; Hankeln T; Schmidt B
IEEE/ACM Trans Comput Biol Bioinform; 2016; 13(3):592-8. PubMed ID: 27295644
[TBL] [Abstract][Full Text] [Related]
33. Genome compression: a novel approach for large collections.
Deorowicz S; Danek A; Grabowski S
Bioinformatics; 2013 Oct; 29(20):2572-8. PubMed ID: 23969136
[TBL] [Abstract][Full Text] [Related]
34. SOAP2: an improved ultrafast tool for short read alignment.
Li R; Yu C; Li Y; Lam TW; Yiu SM; Kristiansen K; Wang J
Bioinformatics; 2009 Aug; 25(15):1966-7. PubMed ID: 19497933
[TBL] [Abstract][Full Text] [Related]
35. ERGC: an efficient referential genome compression algorithm.
Saha S; Rajasekaran S
Bioinformatics; 2015 Nov; 31(21):3468-75. PubMed ID: 26139636
[TBL] [Abstract][Full Text] [Related]
36. Using reference-free compressed data structures to analyze sequencing reads from thousands of human genomes.
Dolle DD; Liu Z; Cotten M; Simpson JT; Iqbal Z; Durbin R; McCarthy SA; Keane TM
Genome Res; 2017 Feb; 27(2):300-309. PubMed ID: 27986821
[TBL] [Abstract][Full Text] [Related]
37. Fast and accurate long-read alignment with Burrows-Wheeler transform.
Li H; Durbin R
Bioinformatics; 2010 Mar; 26(5):589-95. PubMed ID: 20080505
[TBL] [Abstract][Full Text] [Related]
38. AFRESh: an adaptive framework for compression of reads and assembled sequences with random access functionality.
Paridaens T; Van Wallendael G; De Neve W; Lambert P
Bioinformatics; 2017 May; 33(10):1464-1472. PubMed ID: 28057687
[TBL] [Abstract][Full Text] [Related]
39. Fast and accurate short read alignment with Burrows-Wheeler transform.
Li H; Durbin R
Bioinformatics; 2009 Jul; 25(14):1754-60. PubMed ID: 19451168
[TBL] [Abstract][Full Text] [Related]
40. Index suffix-prefix overlaps by (w, k)-minimizer to generate long contigs for reads compression.
Liu Y; Yu Z; Dinger ME; Li J
Bioinformatics; 2019 Jun; 35(12):2066-2074. PubMed ID: 30407482
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
