214 related articles for article (PubMed ID: 22558215)
1. Factors that affect large subunit ribosomal DNA amplicon sequencing studies of fungal communities: classification method, primer choice, and error.
Porter TM; Golding GB
PLoS One; 2012; 7(4):e35749. PubMed ID: 22558215
[TBL] [Abstract][Full Text] [Related]
2. A new fungal large subunit ribosomal RNA primer for high-throughput sequencing surveys.
Mueller RC; Gallegos-Graves LV; Kuske CR
FEMS Microbiol Ecol; 2016 Feb; 92(2):. PubMed ID: 26656064
[TBL] [Abstract][Full Text] [Related]
3. Accurate, rapid taxonomic classification of fungal large-subunit rRNA genes.
Liu KL; Porras-Alfaro A; Kuske CR; Eichorst SA; Xie G
Appl Environ Microbiol; 2012 Mar; 78(5):1523-33. PubMed ID: 22194300
[TBL] [Abstract][Full Text] [Related]
4. Metataxonomic comparison between internal transcribed spacer and 26S ribosomal large subunit (LSU) rDNA gene.
Mota-Gutierrez J; Ferrocino I; Rantsiou K; Cocolin L
Int J Food Microbiol; 2019 Feb; 290():132-140. PubMed ID: 30340111
[TBL] [Abstract][Full Text] [Related]
5. Long-read DNA metabarcoding of ribosomal RNA in the analysis of fungi from aquatic environments.
Heeger F; Bourne EC; Baschien C; Yurkov A; Bunk B; Spröer C; Overmann J; Mazzoni CJ; Monaghan MT
Mol Ecol Resour; 2018 Nov; 18(6):1500-1514. PubMed ID: 30106226
[TBL] [Abstract][Full Text] [Related]
6. Are similarity- or phylogeny-based methods more appropriate for classifying internal transcribed spacer (ITS) metagenomic amplicons?
Porter TM; Golding GB
New Phytol; 2011 Nov; 192(3):775-82. PubMed ID: 21806618
[TBL] [Abstract][Full Text] [Related]
7. Exploring the accuracy of amplicon-based internal transcribed spacer markers for a fungal community.
Li S; Deng Y; Wang Z; Zhang Z; Kong X; Zhou W; Yi Y; Qu Y
Mol Ecol Resour; 2020 Jan; 20(1):170-184. PubMed ID: 31599091
[TBL] [Abstract][Full Text] [Related]
8. From genus to phylum: large-subunit and internal transcribed spacer rRNA operon regions show similar classification accuracies influenced by database composition.
Porras-Alfaro A; Liu KL; Kuske CR; Xie G
Appl Environ Microbiol; 2014 Feb; 80(3):829-40. PubMed ID: 24242255
[TBL] [Abstract][Full Text] [Related]
9. A comprehensive fungi-specific 18S rRNA gene sequence primer toolkit suited for diverse research issues and sequencing platforms.
Banos S; Lentendu G; Kopf A; Wubet T; Glöckner FO; Reich M
BMC Microbiol; 2018 Nov; 18(1):190. PubMed ID: 30458701
[TBL] [Abstract][Full Text] [Related]
10. Introducing ribosomal tandem repeat barcoding for fungi.
Wurzbacher C; Larsson E; Bengtsson-Palme J; Van den Wyngaert S; Svantesson S; Kristiansson E; Kagami M; Nilsson RH
Mol Ecol Resour; 2019 Jan; 19(1):118-127. PubMed ID: 30240145
[TBL] [Abstract][Full Text] [Related]
11. Primer, Pipelines, Parameters: Issues in 16S rRNA Gene Sequencing.
Abellan-Schneyder I; Matchado MS; Reitmeier S; Sommer A; Sewald Z; Baumbach J; List M; Neuhaus K
mSphere; 2021 Feb; 6(1):. PubMed ID: 33627512
[TBL] [Abstract][Full Text] [Related]
12. MinION™ nanopore sequencing of environmental metagenomes: a synthetic approach.
Brown BL; Watson M; Minot SS; Rivera MC; Franklin RB
Gigascience; 2017 Mar; 6(3):1-10. PubMed ID: 28327976
[TBL] [Abstract][Full Text] [Related]
13. Comparison and validation of some ITS primer pairs useful for fungal metabarcoding studies.
Op De Beeck M; Lievens B; Busschaert P; Declerck S; Vangronsveld J; Colpaert JV
PLoS One; 2014; 9(6):e97629. PubMed ID: 24933453
[TBL] [Abstract][Full Text] [Related]
14. Don't put all your eggs in one basket: a cost-effective and powerful method to optimize primer choice for rRNA environmental community analyses using the Fluidigm Access Array.
Brown SP; Ferrer A; Dalling JW; Heath KD
Mol Ecol Resour; 2016 Jul; 16(4):946-56. PubMed ID: 26849494
[TBL] [Abstract][Full Text] [Related]
15. Naïve Bayesian classifiers with multinomial models for rRNA taxonomic assignment.
Liu KL; Wong TT
IEEE/ACM Trans Comput Biol Bioinform; 2013; 10(5):1334-9. PubMed ID: 24384717
[TBL] [Abstract][Full Text] [Related]
16. A Bayesian taxonomic classification method for 16S rRNA gene sequences with improved species-level accuracy.
Gao X; Lin H; Revanna K; Dong Q
BMC Bioinformatics; 2017 May; 18(1):247. PubMed ID: 28486927
[TBL] [Abstract][Full Text] [Related]
17. MIPE: A metagenome-based community structure explorer and SSU primer evaluation tool.
Zou B; Li J; Zhou Q; Quan ZX
PLoS One; 2017; 12(3):e0174609. PubMed ID: 28350876
[TBL] [Abstract][Full Text] [Related]
18. Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy.
Wang Q; Garrity GM; Tiedje JM; Cole JR
Appl Environ Microbiol; 2007 Aug; 73(16):5261-7. PubMed ID: 17586664
[TBL] [Abstract][Full Text] [Related]
19. Quikr: a method for rapid reconstruction of bacterial communities via compressive sensing.
Koslicki D; Foucart S; Rosen G
Bioinformatics; 2013 Sep; 29(17):2096-102. PubMed ID: 23786768
[TBL] [Abstract][Full Text] [Related]
20. Customization of a DADA2-based pipeline for fungal internal transcribed spacer 1 (ITS1) amplicon data sets.
Rolling T; Zhai B; Frame J; Hohl TM; Taur Y
JCI Insight; 2022 Jan; 7(1):. PubMed ID: 34813499
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
