These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
144 related articles for article (PubMed ID: 22569177)
1. OnlineCall: fast online parameter estimation and base calling for illumina's next-generation sequencing. Das S; Vikalo H Bioinformatics; 2012 Jul; 28(13):1677-83. PubMed ID: 22569177 [TBL] [Abstract][Full Text] [Related]
2. Base calling for high-throughput short-read sequencing: dynamic programming solutions. Das S; Vikalo H BMC Bioinformatics; 2013 Apr; 14():129. PubMed ID: 23586484 [TBL] [Abstract][Full Text] [Related]
3. ParticleCall: a particle filter for base calling in next-generation sequencing systems. Shen X; Vikalo H BMC Bioinformatics; 2012 Jul; 13():160. PubMed ID: 22776067 [TBL] [Abstract][Full Text] [Related]
4. A Comparison of Base-calling Algorithms for Illumina Sequencing Technology. Cacho A; Smirnova E; Huzurbazar S; Cui X Brief Bioinform; 2016 Sep; 17(5):786-95. PubMed ID: 26443614 [TBL] [Abstract][Full Text] [Related]
5. PhredEM: a phred-score-informed genotype-calling approach for next-generation sequencing studies. Liao P; Satten GA; Hu YJ Genet Epidemiol; 2017 Jul; 41(5):375-387. PubMed ID: 28560825 [TBL] [Abstract][Full Text] [Related]
6. MiSeq: A Next Generation Sequencing Platform for Genomic Analysis. Ravi RK; Walton K; Khosroheidari M Methods Mol Biol; 2018; 1706():223-232. PubMed ID: 29423801 [TBL] [Abstract][Full Text] [Related]
7. ComB: SNP calling and mapping analysis for color and nucleotide space platforms. Souaiaia T; Frazier Z; Chen T J Comput Biol; 2011 Jun; 18(6):795-807. PubMed ID: 21563978 [TBL] [Abstract][Full Text] [Related]
8. BlindCall: ultra-fast base-calling of high-throughput sequencing data by blind deconvolution. Ye C; Hsiao C; Corrada Bravo H Bioinformatics; 2014 May; 30(9):1214-9. PubMed ID: 24413520 [TBL] [Abstract][Full Text] [Related]
9. BayesCall: A model-based base-calling algorithm for high-throughput short-read sequencing. Kao WC; Stevens K; Song YS Genome Res; 2009 Oct; 19(10):1884-95. PubMed ID: 19661376 [TBL] [Abstract][Full Text] [Related]
10. TotalReCaller: improved accuracy and performance via integrated alignment and base-calling. Menges F; Narzisi G; Mishra B Bioinformatics; 2011 Sep; 27(17):2330-7. PubMed ID: 21724593 [TBL] [Abstract][Full Text] [Related]
11. Lane-by-lane sequencing using Illumina's Genome Analyzer II. Gravina MT; Lin JH; Levine SS Biotechniques; 2013 May; 54(5):265-9. PubMed ID: 23662897 [TBL] [Abstract][Full Text] [Related]
12. RDscan: A New Method for Improving Germline and Somatic Variant Calling Based on Read Depth Distribution. Lee S; Hong S; Woo J; Lee JH; Kim K; Kim L; Park K; Jung J J Comput Biol; 2022 Sep; 29(9):987-1000. PubMed ID: 35749140 [TBL] [Abstract][Full Text] [Related]
13. End-to-End Optimization of High-Throughput DNA Sequencing. O'Reilly E; Baccelli F; De Veciana G; Vikalo H J Comput Biol; 2016 Oct; 23(10):789-800. PubMed ID: 27387090 [TBL] [Abstract][Full Text] [Related]
14. naiveBayesCall: an efficient model-based base-calling algorithm for high-throughput sequencing. Kao WC; Song YS J Comput Biol; 2011 Mar; 18(3):365-77. PubMed ID: 21385040 [TBL] [Abstract][Full Text] [Related]
15. Apollo: a sequencing-technology-independent, scalable and accurate assembly polishing algorithm. Firtina C; Kim JS; Alser M; Senol Cali D; Cicek AE; Alkan C; Mutlu O Bioinformatics; 2020 Jun; 36(12):3669-3679. PubMed ID: 32167530 [TBL] [Abstract][Full Text] [Related]
16. ADS-HCSpark: A scalable HaplotypeCaller leveraging adaptive data segmentation to accelerate variant calling on Spark. Xiao A; Wu Z; Dong S BMC Bioinformatics; 2019 Feb; 20(1):76. PubMed ID: 30764760 [TBL] [Abstract][Full Text] [Related]
17. Somatic and Germline Variant Calling from Next-Generation Sequencing Data. Chang TC; Xu K; Cheng Z; Wu G Adv Exp Med Biol; 2022; 1361():37-54. PubMed ID: 35230682 [TBL] [Abstract][Full Text] [Related]
18. ART: a next-generation sequencing read simulator. Huang W; Li L; Myers JR; Marth GT Bioinformatics; 2012 Feb; 28(4):593-4. PubMed ID: 22199392 [TBL] [Abstract][Full Text] [Related]
19. smallWig: parallel compression of RNA-seq WIG files. Wang Z; Weissman T; Milenkovic O Bioinformatics; 2016 Jan; 32(2):173-80. PubMed ID: 26424856 [TBL] [Abstract][Full Text] [Related]